Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01461 ATGAGTGGTTTAACCTTAAAAAGCTTCACATACATGCTTCTAATTACATTTCTAATTTGGTCTTCAAATTTTGAGTGCTGCATTGCAAGAAGAGGTAAGCATTGGAGACACACAAGAACTTTCTCATCTTCTTTGTTTAAGAAGAAAGGAAAGAGTTACAATGGAAATAGTCATAATAAAAATCACCATAATGGAGGatcaaattcaaaaccaaaGTCACCACCATTATCACCAAAAGCTCCTCCACAACATAAAAGTGTTCCATCACCTTCACCAATTTCTAAACCAAAATATTCTCCTTCAATTCCACCACCAAAAGGTAACAATGGAGTGCATTCAACTTTCTTCAATGTGCTAGATTATGGAGCTAAAGGAGATGGTAACACTGATGATACTAAGGCATTTCAAGCAACATGGGCAGCTGCATGTAAAGTAGAGGCATCAACAATGGTGGTTCCAGCAGATTACATTTTCTACGTGGGCCCTATTTCATTCTCTGGCCCATATTGTAAGCCCAATATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAACCCAAATGCTTGGAGTGGAGTAACCCTACAGTGGCTGGAATTCACAAAACTAGAAAAAATTACCATTCAAGGAAATGGTGTCATTGATGGAAAAGGCTCAGTTTGGTGGCAAGATTCTCCATATGATAATCCAATAGATGATGAAGAAAAGCTTATAGTTCCTTTAAATCACACTCAGAAGCCTCCAATGCCGGTACAAAATGAGATGGGAAGAAAAATGCCAAGTAACAAGCCAACTGCATTAAGGTTTTATGGGAGTTATAGTCCAACTGTGACAGGCATAACAATTCAAAATAGTCCACAGTGTCACCTAAAGTTTGATAATTGCAATGGAGTCCTTGTTCATGATGTGACCATTTCATCTCCTGGTGATAGTCCTAACACCGATGGAATTCATCTTCAGAATTCCAAAGATGTTTTGATTCGCAACAGCAAGTTAGCATGCGGAGATGATTGTATTTCTATACAAACTGGATGCTCAAATGTGTATGTACACAATGTGAACTGTGGTCCAGGACATGGAATCAGCATTGGAAGTTTAGGAAAAGATAACACTAGAGCATGTGTCTCAAATATTACTGTCAGAGATGTCAACATTCATGACTCAATGAATGGTGTTAGAATCAAAACATGGCAGGGTGGATCTGGTTCAGTACAAGGAGTACTATTCTCAAACATACAAGTTACAGAAGTTCAACTTCCAATTGTGATTGACCAATTTTACTGTGACAAAAGAACATGCACAAATCACACTTCAGCGGTGTCGCTAGCAGGAATCAACTACGAAAGAATAAAGGGAACATACACAGTTAAACCAGTACACTTTGCTTGCAGCGATAACTTGCCTTGCGTAGATGTTTCTTTAACCTCTGTCGAGTTAAAACCGattcaagaaaaatatcatttataTGATCCATTCTGTTGGCAGACATTTGGTGAATTAAGAACTCCAACTGTCCCACCAATTGGTTGTTTACAGATTGGGAAGCCGCCTAACAATCGAATTCAGACCGATCATGATATATGTTGA 1590 0.3774 MSGLTLKSFTYMLLITFLIWSSNFECCIARRGKHWRHTRTFSSSLFKKKGKSYNGNSHNKNHHNGGSNSKPKSPPLSPKAPPQHKSVPSPSPISKPKYSPSIPPPKGNNGVHSTFFNVLDYGAKGDGNTDDTKAFQATWAAACKVEASTMVVPADYIFYVGPISFSGPYCKPNIVFQLDGTIIAPTNPNAWSGVTLQWLEFTKLEKITIQGNGVIDGKGSVWWQDSPYDNPIDDEEKLIVPLNHTQKPPMPVQNEMGRKMPSNKPTALRFYGSYSPTVTGITIQNSPQCHLKFDNCNGVLVHDVTISSPGDSPNTDGIHLQNSKDVLIRNSKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNIHDSMNGVRIKTWQGGSGSVQGVLFSNIQVTEVQLPIVIDQFYCDKRTCTNHTSAVSLAGINYERIKGTYTVKPVHFACSDNLPCVDVSLTSVELKPIQEKYHLYDPFCWQTFGELRTPTVPPIGCLQIGKPPNNRIQTDHDIC 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01461 529 Gene3D - 107 509 IPR012334 -
Tsu05g01461 529 SMART pbh1 204 225 IPR006626 -
Tsu05g01461 529 SMART pbh1 346 366 IPR006626 -
Tsu05g01461 529 SMART pbh1 296 322 IPR006626 -
Tsu05g01461 529 SMART pbh1 405 426 IPR006626 -
Tsu05g01461 529 SMART pbh1 376 397 IPR006626 -
Tsu05g01461 529 SMART pbh1 323 344 IPR006626 -
Tsu05g01461 529 MobiDBLite consensus disorder prediction 46 104 - -
Tsu05g01461 529 SUPERFAMILY Pectin lyase-like 113 527 IPR011050 -
Tsu05g01461 529 MobiDBLite consensus disorder prediction 46 73 - -
Tsu05g01461 529 PANTHER - 6 519 - -
Tsu05g01461 529 MobiDBLite consensus disorder prediction 74 103 - -
Tsu05g01461 529 Pfam Glycosyl hydrolases family 28 262 481 IPR000743 GO:0004650|GO:0005975
Tsu05g01461 529 Pfam Glycosyl hydrolases family 28 145 228 IPR000743 GO:0004650|GO:0005975
Tsu05g01461 529 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 519 - -
Tsu05g01461 529 ProSitePatterns Polygalacturonase active site. 353 366 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01461 Tsu-Chr5 13897503 13903237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01461 4 529 Glycoside Hydrolase AT1G60590 65.543 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01461 - - gmx:732602 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01461 05 13897503 13903237 Tsu05g01461 05 13897503 13903237 ECH