Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01441 ATGAAGCAAAACAAAAGTTTTTCTCAACTCTTTTTCATGTCCTTGTTAATGCTTATGGTTTATGTGGATGCAAGGAAGACTAACATGAAGAAAAAACTTCACAAACATCCCAAAGAATCACATCCTCTTCCTCATTATGATCCTCATCCAATCCAATTAAACACTTATGACATTATGTCTTTTGGTGCAAAAGGCAATGGAGTTTCTGATGATTCAGAGGCATTTCTAGCTGCATGGAAATGTGCATGCAAAGTTTCTGGTGCAACAATCAAAGTTCCAGCAAAATTCAACTTTCTTATTAAGCCTATTACTTTACAAGGCCCTTGTATGCCTGATCTTACTCTTCAGATAGATGGAACAATATTGGCTCCTTCTGAAGTATCTTCATGGCCAAAATCCAGTTTGTTTCAGTGGATAAATTTCAAATGGGTGCAGAACTTTACTATCAAAGGTTATGGCACTATTGATGGTCAAGGCTCTAACTGGTGGAGCTCCTCAGAACTTTATGATATACAGAAAAAAACTGATCACTCTAAACAAATTCCAAGCATGAAGCCAACTGCAATAAGATTCTACTCTAGCAACCTTATAAAGATCAGagatatcaaaattataaacagTCCTCTATGCCATCTTAAATTTGACAATTCAAAGGGAATCAAAGTTGATAATATTACAATATTTTCCCCTGAAAATAGCCCAAACACCGATGGAATTCACTTGCAAAACACACAGGATGTAGAAATTCAACATTCTAACATTGGAACTGGAGATGACTGTGTGTCCATCCAAACTGGTTGTTCTAATATTCATGTCCACCACATTAAATGTGGCCCAGGTCATGGCATAagTTTGGGAGGATTAGGAAAAGACAAGAGTGTGGCATGCGTCTCTGACATCATTGTTGAGGACATTTCTATGAAAAATACACTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCAATGGTATGGTTAAAAATGTAACATTTTCAAGAATGAAAGTCTATGATGTTATGTTTCCAATAATGATAGACCAATACTATTGTGACAAACAAATTTGCAAGAACCAAACAGGAACAGTGGCAATTTCTGGTGTTAAATTTGATCAAATAAGTGGTAGTTATTCAGTGCAGCCAGTCCACCTAGCTTGCAGCAATTCCATACCATGTACAGATGTTGATTTAACTGACATTGAGTTAAGGCCTTCCCTTAAATATAGAGGTTACCAACAAGCTATGTGTTGGAATTCTTATGGAAAATCACAAGGTCAATTAGTACCTTCAAGTATTGATTATTGTTTGAGAAGTGGTGGTGGATTAATAAAGAGGATAGCAAAGTCACATGATAGTGtgtgttataaattgttttaG 1374 0.3559 MKQNKSFSQLFFMSLLMLMVYVDARKTNMKKKLHKHPKESHPLPHYDPHPIQLNTYDIMSFGAKGNGVSDDSEAFLAAWKCACKVSGATIKVPAKFNFLIKPITLQGPCMPDLTLQIDGTILAPSEVSSWPKSSLFQWINFKWVQNFTIKGYGTIDGQGSNWWSSSELYDIQKKTDHSKQIPSMKPTAIRFYSSNLIKIRDIKIINSPLCHLKFDNSKGIKVDNITIFSPENSPNTDGIHLQNTQDVEIQHSNIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVACVSDIIVEDISMKNTLYGARIKTWQGGNGMVKNVTFSRMKVYDVMFPIMIDQYYCDKQICKNQTGTVAISGVKFDQISGSYSVQPVHLACSNSIPCTDVDLTDIELRPSLKYRGYQQAMCWNSYGKSQGQLVPSSIDYCLRSGGGLIKRIAKSHDSVCYKLF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01441 457 PANTHER - 13 442 - -
Tsu05g01441 457 SUPERFAMILY Pectin lyase-like 52 431 IPR011050 -
Tsu05g01441 457 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 442 - -
Tsu05g01441 457 Pfam Glycosyl hydrolases family 28 88 404 IPR000743 GO:0004650|GO:0005975
Tsu05g01441 457 Gene3D - 49 437 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01441 Tsu-Chr5 13637794 13641858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01441 10 453 Glycoside Hydrolase AT3G26610 59.956 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01441 K01213 - gmx:100803027 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01441 05 13637794 13641858 Tsu05g01441 05 13637794 13641858 ECH