Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01389 atGAAGTTCATGAAACTTGGATCTCGTCCAGATACTTTCTATACTTCAGAAGCTATAAGGACTATCTCTTCTGAAGTTTCTAGTGACCTTATAATTCAAGTTAGGGGAAGTAGATATCTTCTTCACAAGTTTCCCCTGCTGTCCAAATGCTTATGCCTGCAAAGATTATGCTCAGAATCACCTCCTGATTCATCTCATCATCAAATAGTCCAACTTCCTGATTTTCCTGGTGGAGTGGAAGCATTTGAGTTATGTGCTAAGTTCTGTTATGGAATCACCATTACTTTAAGTCCTTACAACATTGTAGCAGCAAGATGTGCTGCTGAATATCTGCAAATGACTGAAGAAGTTGAGAAAGGAAACTTGATTAACAAGCTTGagattttcttcaattcttgcATCCTTCATGGTTGGAAGGATACCATAGTGAGTCTTCAGACCACAAAAGCGTTGCATTTGTGGTCCGAAGACTTAGGAATTACCAGCAGATGCATTGAAACTATTGCGTCGAAAGTCTTGAGGCACCCTACAAAAGTGAGTTTGTCACATAGTCATTCTAGAAGGGTGAGAGATGATATATCTTGCAATGACACAGAAAGTTTGAGAACGAAATCAGGAAGTAAAGGATGGTGGGCTGAAGATTTAGCAGAACTTAGCATAGACCTTTATTGGAGAACCATGATAGCAATCAAATCTGGTGGCAAGGTTCCTTCAAATCTCATTGGTGATGCATTGAAAGTTTATGCATCTAGATGGTTACCAAATATTTCCAAGAATGGAAATAGAAAGAAGAATGTTTCACTAGCCGAGTCTGAAGTAGACGACTCGGCCAGTGAAATAACTTCAAAGCATAGACTGCTTTTGGAGTCAATAGTAAGCTTGCTTCCAACCGAAAAAGGCGCTGTTTCTTGTAGCTTTCTTTTGAAACTCTTGAAAGCATCAAATATTCTCAatgcttcttcatcttcaaagaTGGAATTAGCAAGAAGGGTAGGACTTCAATTGGAGGAAGCCACAGTGAATGATCTACTGATACCTTCACTTTCTTATACAAATGATACTGTCTATGATGTTGAGTTGGTGATGACTATATTGGAACAATTCATGTTACAAGGACAAAGTCCTCCAACTAGCCCTCCAAGATCCTTGAAGACATTTGAAAGACGGCGGTCTCGCTCTGCGGAGAATATTAACTTTGAATTACAAGAGAGTAGAAGATCATCTTCAGCATCTCATAGTTCAAAATTGAAGGTTGCAAAGCTTGTGGATAGGTACCTTCAAGAAGTTGCAAGAGATGTGAATTTTTCTTTGTCTAAATTCATTGCTCTTGCTGATATTATACCAGATTTTGCAAGACATGATCATGATGATCTCTATAGAGCCATTGACATTTATCtcaaggtaaaaaaaattcctacaaaatactttttgtgttttttaagtCACAATCCTTAA 1455 0.3636 MKFMKLGSRPDTFYTSEAIRTISSEVSSDLIIQVRGSRYLLHKFPLLSKCLCLQRLCSESPPDSSHHQIVQLPDFPGGVEAFELCAKFCYGITITLSPYNIVAARCAAEYLQMTEEVEKGNLINKLEIFFNSCILHGWKDTIVSLQTTKALHLWSEDLGITSRCIETIASKVLRHPTKVSLSHSHSRRVRDDISCNDTESLRTKSGSKGWWAEDLAELSIDLYWRTMIAIKSGGKVPSNLIGDALKVYASRWLPNISKNGNRKKNVSLAESEVDDSASEITSKHRLLLESIVSLLPTEKGAVSCSFLLKLLKASNILNASSSSKMELARRVGLQLEEATVNDLLIPSLSYTNDTVYDVELVMTILEQFMLQGQSPPTSPPRSLKTFERRRSRSAENINFELQESRRSSSASHSSKLKVAKLVDRYLQEVARDVNFSLSKFIALADIIPDFARHDHDDLYRAIDIYLKVKKIPTKYFLCFLSHNP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01389 484 Gene3D Potassium Channel Kv1.1; Chain A 14 121 IPR011333 -
Tsu05g01389 484 Pfam NPH3 family 210 469 IPR027356 -
Tsu05g01389 484 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 469 - -
Tsu05g01389 484 ProSiteProfiles NPH3 domain profile. 209 484 IPR027356 -
Tsu05g01389 484 PANTHER OS12G0117600 PROTEIN 1 469 IPR043454 -
Tsu05g01389 484 SUPERFAMILY POZ domain 22 117 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01389 Tsu-Chr5 12981958 12986156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01389 26 467 EF-hand Containing Proteins AT3G44820 32.972 5.31e-68 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01389 - - gmx:100797361 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01389 05 12981958 12986156 Tsu05g01389 05 12981958 12986156 ECH