Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01269 ATGTCTAGTTCAAATTCTCCACACGGTGGTGAAAAACAAGATAATCAAATGGATCCACCTTCAACGGTGAATTCAATTTATGAAACTGTAGAAATTGCTCAACCTGGTTCTCCGTTACCTGATTGTGACGGAGTTTTCGTTGAATCTCTTCCTCTTGTTGACGGCTCTCCTCGGCCGTTAACAGATGCTGTTCTTGTGTACGGCGATGTTCAGGAGGGAGATCCAAACCAGTCAGTTATTTGTGATGTGAAAAATGGTGGTGATTCGTCTTTGATTTGGCCGGAGGCGGTGGATCCCCAGGAGTGTCGTCCTCTGAACTCTTCGCGGGTTTTGGCTGTGCAGCCGGAGGCTTGGGTACCGGCGAATTCTGCTGATGATAGTTGGGTGTATGAGGATCTCTTACAGGATGTAATTTATGAATCTGATTCTAAAGCTGTGCCATCAATAATTGGAGCTGGGCTTGCCAACCTTGGTAACACGTGCTTTCTCAATTCAATTATGCAATGCTTCACGCATACGGTGCCCCTATTGGAATCTATTCTTGATTGCAGCCACACATATGATGATCGTCATTATGGGTTCTGTGTTATTTGTGCTTTCCGCTACCAGATGACACATTCCTTGCAGTCTACTGGAAGAGTTGTCTCCCCTTATATACTTGTGGATAATCTGCATTATTTTAATAAGAGTTTTAGAAGATATCAGCAAGAGGATGTACATGAGTTTATGTCGTGTGCATTGGATGAACTTGATTCATGTTTTTTAAATCTGAAGAGGAATAATCCAAATTTTGAGGACAAGAATATTGTTCAGAAAGTTTTTGGTGGCAGTCTGGCTAGCAAGCTCCGATGTTGTAACTGTGGCCACTCTTCTGACACTAGTGATCCAATTATTGATTTGAGTTTACAATTAGAAAATGTAGATGCTCTTTCAAGTGCTTTAGAATCTTTCACTATGGTGGAAAACATGGACGGAAAGTTTAAATGTGAGGGCTGCAACGAGGAAGTGTCTAAGGAGAAACGGCTTATGTTGGGTGAGACACCTACTATTGCTGCATTCCATTTAAAGAGGTTTAAGACAGATGGGATTTTAGTTGAAAAGATTGACAAGCATATCAAGTTTCCTTTGGAGTTGGACTTGCAACCCTACACCATTTTGAATGGAAACAATGATGTATCATTGAAATATGATCTATATGCAGTTGTTGTGCATACTGGATTTTCATCTACGTCAGGTCATTACTTCTGCTTCATTCGCACTGCTCCAGACACATGGCATAAGTTTGATGATTCAAAGGTTACTAAGGTATCAGAAGAGACTGTGTTGTCTCAGGAAGCATACATGCTGTTTTATGCTCGACAGGGTACACCTTGGTTTTCGAAATTTGTAGAAAGTAGGATTCCAGTCTTGGAACGGTGCAATACGTCTCCCAAGTCTGTTTTAGACGTCACAGATGGCCAGGATAAATCATGCCCTACTTTAAATGGAAATATTGAGAGGAGTGGCGTCGGGGAATCCAAAGAATTGACAGATGGCCAGAATAAATCATTTCCTACTTTAAATGGAAATATTGAGAGGAGTGGGGCTGGTGAATCCAAAGAATTTCCCAAGAAGTTTGATTATTCTGGTCGACAAAGTCGTGAGTTTCTTGAAACTGATGACATTATTTATGCTTCTCCTTGCCGTGAACAATTTCCTGCCGGGCCATCAAATCAGAAAACTCCCAATTTGAGTGGATCAGAAGATATAAATGCCCAGGTGCAACCTTTGAATCGTACCAGCTTGACTAATATTGCAAAGCCTGGTGGTAGTTCACATGCTGAGAATGGTGCTCCTGATAAAAACAAATGCAGTCAGGATGTTTTTGATTTTATAGAAAATGACGGTTTCAATCCTTTAACTCCTCCCAACTCGCCCCCTTATCAGACTCCACCAGGTAAGAGTTTCCAGATCTCACGTGATCATTTGAAGACTGAGAATCAAGGGAGCTGTAaaagatcatcatcatcatcatcaaataagTCCAATAAGTCAGCAGATAGTGCTGAAACAAAAGCTGCCATCACATATCTTAAGAAGATGCGTGGTTTGAGTTCGAGGAGATGTGCATTAATGGAATACCTTGATGCTAGTCCTAGCAACAGCAAAGGCTCCTCtgagaacaaaagaaaaaagactgATTCATCGCAGTCTGACAAAGGCAACAACAGTGCTCGCAAGAAATCAAGCCATGCTTCTGTCACCGCCTACCCTGTGGCAGCCGGAATTTCACAGTGA 2277 0.4106 MSSSNSPHGGEKQDNQMDPPSTVNSIYETVEIAQPGSPLPDCDGVFVESLPLVDGSPRPLTDAVLVYGDVQEGDPNQSVICDVKNGGDSSLIWPEAVDPQECRPLNSSRVLAVQPEAWVPANSADDSWVYEDLLQDVIYESDSKAVPSIIGAGLANLGNTCFLNSIMQCFTHTVPLLESILDCSHTYDDRHYGFCVICAFRYQMTHSLQSTGRVVSPYILVDNLHYFNKSFRRYQQEDVHEFMSCALDELDSCFLNLKRNNPNFEDKNIVQKVFGGSLASKLRCCNCGHSSDTSDPIIDLSLQLENVDALSSALESFTMVENMDGKFKCEGCNEEVSKEKRLMLGETPTIAAFHLKRFKTDGILVEKIDKHIKFPLELDLQPYTILNGNNDVSLKYDLYAVVVHTGFSSTSGHYFCFIRTAPDTWHKFDDSKVTKVSEETVLSQEAYMLFYARQGTPWFSKFVESRIPVLERCNTSPKSVLDVTDGQDKSCPTLNGNIERSGVGESKELTDGQNKSFPTLNGNIERSGAGESKEFPKKFDYSGRQSREFLETDDIIYASPCREQFPAGPSNQKTPNLSGSEDINAQVQPLNRTSLTNIAKPGGSSHAENGAPDKNKCSQDVFDFIENDGFNPLTPPNSPPYQTPPGKSFQISRDHLKTENQGSCKRSSSSSSNKSNKSADSAETKAAITYLKKMRGLSSRRCALMEYLDASPSNSKGSSENKRKKTDSSQSDKGNNSARKKSSHASVTAYPVAAGISQ 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01269 758 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 396 414 IPR018200 GO:0004843|GO:0006511
Tsu05g01269 758 MobiDBLite consensus disorder prediction 507 526 - -
Tsu05g01269 758 Pfam Ubiquitin carboxyl-terminal hydrolase 153 451 IPR001394 GO:0004843|GO:0016579
Tsu05g01269 758 SUPERFAMILY Cysteine proteinases 150 453 IPR038765 -
Tsu05g01269 758 Gene3D Cysteine proteinases 150 458 - -
Tsu05g01269 758 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 117 474 - -
Tsu05g01269 758 MobiDBLite consensus disorder prediction 1 24 - -
Tsu05g01269 758 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 153 168 IPR018200 GO:0004843|GO:0006511
Tsu05g01269 758 MobiDBLite consensus disorder prediction 565 581 - -
Tsu05g01269 758 MobiDBLite consensus disorder prediction 708 758 - -
Tsu05g01269 758 MobiDBLite consensus disorder prediction 499 537 - -
Tsu05g01269 758 MobiDBLite consensus disorder prediction 595 683 - -
Tsu05g01269 758 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 117 474 - -
Tsu05g01269 758 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 152 454 IPR028889 -
Tsu05g01269 758 MobiDBLite consensus disorder prediction 662 683 - -
Tsu05g01269 758 MobiDBLite consensus disorder prediction 561 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01269 Tsu-Chr5 11483935 11487985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01269 153 504 Miscellaneous Gene Families AT2G24640 33.425 3.75e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01269 K11855 - gmx:100806936 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01269 05 11483935 11487985 Tsu05g01269 05 11483935 11487985 ECH