Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01255 ATGGCCAAAAAGAAACAGAAAGAGCCAAAACAAACCCCTCAGAACGACACCGTTTCAGCCCCTTCCAGCATTTTCGACACGCTTTTTGCCAACGCGCCGGAACAAATCACCCCCACCGCCGCCTCTCTATTTTCCGATGAAAATCCCTTTAAGAGAAAGGCTTCACAACCAGCTCCCATTTCCGACGTATCCGAAAAAAGCGTCGTTGAggaaaagaagaggaagaagaagaaagaggaaaGTTCCGTGATTGATTCAAATTCTGCAATTGAAGtttcagagaagaagaaaaagaagaaaagtggTTCGGCTGAAGGGGATGAGGAAGAAAAAGAGCTTAATTTGGATGTTGAAACAATTGGGAAGAAGGATAAGAAGAAGAGGAAAAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTGAGGGAGGAGACAAGGATGAAAAAGTTGGGAATAAGAGAAAATTGCGCGATAATCCGGCCGATATGTTGGTTTCAAAGGAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTACCTCTTAAGGTGAAAAAGAAGACTTTGTTGAAGGAATTTAAGCAATTTGGGGAGGTTGAATCTGTTAGGATTCGTTGTGTTCCTTTACAAGATACCAAAAAGCCTAGAAAGGGAGCTATCCTTGCGAAGCAGATCGATGAATCAGCTGAAAGTGTCAATGCTTACGTTGTTTTCAAAACAGAGGAGTCTGCTCAGGCTTCTTTGGCCCACAACATGACTGTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACTCAAAGGGGACAGTTCTTCGCTTTATGATAACAAGAGAACTGTTTTTGTAGGCAATCTCCCGTTTGATGTGAAGGATGAAGAACTTTATCAGCTATTTAGTAGTATACCCAATCTAGAATCAAGTGTAGAAGCTGTTAGAGTTGTCCGAGATCCTCATGTTAATGTTGGAAAGGGAATTGCATATGTGCTATTTAAAACAAGGGAAGCTACCATTTCCGTTATTAAGAAACGGTCCTTGAAGCTGCGAGATCGAGAATTGAGACTCAGTCATGCCAAAGCAGATGCTAGTGCTACACCATCTAAAAGGCCATACTCTCCAGCGGCACGAGTCAATCATGGCAAACCAGGTGCTACCCCATCTAAAAGACCATACTCTCCAGCAGCACAAGCTCATAGTACCCCTGCAAAGAAGTTTTCAGGGGATTCAAGGTCTCCTTCAAGCATTAAGAACAGGTCAAACAGCAAAGCTACTGCATCTTATCAGGGTCTGCGTGCAACCAAAACTGATGTCCACAAGAAAAGTCATGGTGCAGAAAAACCAAAAGAGCGCACAAAGAAAAGACCAACAGTAGCTGCCAGAAAGGCTAAAGCAAACATGCAGAAGGATGGTAGTACACCAAAGAGTGCTACACCAAAACAAGCAGGGTTCAAACGCAAGTTTGATAGTCGCACTCCTGATAGCTCCCGACGAGTTAACAAAACCCAAAAGAAGAGGTAG 1560 0.4179 MAKKKQKEPKQTPQNDTVSAPSSIFDTLFANAPEQITPTAASLFSDENPFKRKASQPAPISDVSEKSVVEEKKRKKKKEESSVIDSNSAIEVSEKKKKKKSGSAEGDEEEKELNLDVETIGKKDKKKRKRDEVEKEWEEKKYGIVEGGDKDEKVGNKRKLRDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKQFGEVESVRIRCVPLQDTKKPRKGAILAKQIDESAESVNAYVVFKTEESAQASLAHNMTVVEGNHIRVDRACPPRKKLKGDSSSLYDNKRTVFVGNLPFDVKDEELYQLFSSIPNLESSVEAVRVVRDPHVNVGKGIAYVLFKTREATISVIKKRSLKLRDRELRLSHAKADASATPSKRPYSPAARVNHGKPGATPSKRPYSPAAQAHSTPAKKFSGDSRSPSSIKNRSNSKATASYQGLRATKTDVHKKSHGAEKPKERTKKRPTVAARKAKANMQKDGSTPKSATPKQAGFKRKFDSRTPDSSRRVNKTQKKR 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01255 519 MobiDBLite consensus disorder prediction 370 519 - -
Tsu05g01255 519 SMART rrm1_1 294 370 IPR000504 GO:0003723
Tsu05g01255 519 SMART rrm1_1 183 272 IPR000504 GO:0003723
Tsu05g01255 519 Gene3D - 178 281 IPR012677 -
Tsu05g01255 519 MobiDBLite consensus disorder prediction 447 466 - -
Tsu05g01255 519 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 518 - -
Tsu05g01255 519 SUPERFAMILY RNA-binding domain, RBD 175 283 IPR035979 GO:0003676
Tsu05g01255 519 MobiDBLite consensus disorder prediction 495 512 - -
Tsu05g01255 519 Gene3D - 282 382 IPR012677 -
Tsu05g01255 519 CDD RRM1_RBM34 182 272 IPR034220 -
Tsu05g01255 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 374 IPR000504 GO:0003723
Tsu05g01255 519 MobiDBLite consensus disorder prediction 12 44 - -
Tsu05g01255 519 MobiDBLite consensus disorder prediction 1 137 - -
Tsu05g01255 519 SUPERFAMILY RNA-binding domain, RBD 288 395 IPR035979 GO:0003676
Tsu05g01255 519 MobiDBLite consensus disorder prediction 115 137 - -
Tsu05g01255 519 MobiDBLite consensus disorder prediction 416 445 - -
Tsu05g01255 519 CDD RRM2_RBM34 294 370 IPR034221 -
Tsu05g01255 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 367 IPR000504 GO:0003723
Tsu05g01255 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 226 IPR000504 GO:0003723
Tsu05g01255 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 276 IPR000504 GO:0003723
Tsu05g01255 519 MobiDBLite consensus disorder prediction 65 108 - -
Tsu05g01255 519 PANTHER RNA-BINDING PROTEIN 34 45 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01255 Tsu-Chr5 11303002 11306829 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01255 K14837 - gmx:100784494 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01255 05 11303002 11306829 Tsu05g01255 05 11303002 11306829 ECH