Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01242 ATGATGTTAGAACATGAAACTCCAAATTTCAATGACCCACTTCCCAAAACCACATCAAAATTGTCTCTTTTGGTTGTTATAGTCTTAAAGTCTTTAAATTGGAGGAATGCAAGTGAAATAAAGTTCAAGGGTTGGGTTCAAATTCATGGTTTTTCTCATTCAATCAATTCCTTTAGAATAATGATTCATACTTTTGCTTTAGATGGTATGCGTTTAGAAGTGTTTGCTTTGCTTAGAGATATTGTTGGATATTATAAAGAAGAAAATCGTGACGCGTTTCAATTGTTTTCGGCTTTGCTTGATTCGCCACATCATGTGGAAAGGTCTGTTGTGTTTGATATGCTTATGAAAGTTTTTGCTTCGAACGCTATGCTTGAACATGCTTATTATGTGTTTGTTAGTGCTAAGGATGTTGGGATTGAATTGAATATAATGTGTTGCAATTTCTTGTTGAAATGTTTGGTAGAAGCAAATAGAGTGGATGGTATGAGATGTTTGTTTGAGGATTTGAAAAACTTTGGTCCTACGCCGAATATCCACACTTATACTATCATGATGAACTTTTATTGTAGAGATGTTGGGTGCAGTGTTGATATTAGACGGGCTTCTGAGATTTTAGGGAAGATATATGGGAGTGGGGAAACCCCGAATATTGTCACGTATAGTACTTATATTAAGGGACTTTGTAAAATTGGTTCCTTTAAGGTTGCTTGGAAGTTAATTAGTAACTTGCACCATAAAAACCAGCCTCTCAATAGCCATTGTTTTAATGCTGTCATATATGGACTTTGTCAAAGAGGTTCCGTAGATGAAGCTTCGGGTGTtttggaagaaatgaaaaactTTGGAGTATTGCCTGATTTTTATAGTTATAGCATTTTAATTGATGGATTTTGTAGTGAAGGTGGTATGGATTCAGCCGTCAAGATTTTGAAGGAGATGAGTAGCAATAATATAGCTCCTTCTGCTTTTAGTTGTTGCAGTCTAATTAGGGAATTCTACAAATTGAGACGATTCACTAAAGCATTGGAAGTTTTTAGTATCATGCAAAAACATGGTATATGGCCAGATACAATCGCTTGCAACCATATTCTTAGTATATACTGCAGGGAAAGCGACTTCAATGAAGCCTTGGTATTGTCGGAGGAATTCCAAGAACACGGAGTTAACCTTAACCCACATTCATATAATGAATTCATCCACAAGCTTTGCAGAGAAAGTTTTCCAAAAAAGGCACTTGAGCTTCTGCCAATAATGCTTAAAAGGAATGTACTTCCTGGAGTTGTTAATTATAGTACTCTTATATCTGGCATTGCCAAACAGTCAAATCCTAAAAAAGCTGTGATGTTATTcacaagaatgacaaaagtCGGAATCACTTTCAACGTAAAAACGTATACAATTCTTATTGACCTATGTACCCGTTATTGCGGAATGCTTAGAGCATATTACTTATTTGAGGAGATGCAAGAAAGGCGTGTATATCCAGATCAGATCTCATATACAACTCTAATCACTGCCTTTTGTAATACTGGAGAAATGGTTAAGGCACGGGCGTTATTTGATGAAATGTTGCGGGAAGGCTGTTCACCAAATGTAATTACTTATACTTGTATGATCAGTGGATATTGGAAGTTAAACATGATGGATCAGGTTAAGAAGTTGTATAGTGAAATGAAAGAAAAGGGTGTATATCCAGATGAGATCGCATATACAACTCTAATAGCTGTCTTCTGTAGTGCTAGAGAAATGATTTTGGCGCAGGCATTATTTGATGAAATGTTACGGGAAGGCTATTCACCAAATGTAATTCTTTATACTTGTATGATTAATGGATATTGGAAGTTAAACATGATAGACCGGGCTAAGAAATTGTATGAcgaaatgaaagaaaatggtgTATATCCAGATCAGATTGCATATACAACTCTAATAGCTGCCTTTTGTAATGCTAGAGAAATGATTATGGCACGGACATTATTTGATGAAATGTTGCGGAAAGGCTATCCGCCTAATGTAGCTCTGTCAAGGCTTCCATTATATCCAGCTGAAATTTGTATAGTTGAAGGTGATCCAGGTAAATTACACATTGTCATTCTCCCTTTGGTGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAACAGCAATTTACAAAAATGAAGAGATCCAACATTCAATCATTGGTCTTGGTCTCAGAGTGAAGggAGAAGATATTTAA 2220 0.35 MMLEHETPNFNDPLPKTTSKLSLLVVIVLKSLNWRNASEIKFKGWVQIHGFSHSINSFRIMIHTFALDGMRLEVFALLRDIVGYYKEENRDAFQLFSALLDSPHHVERSVVFDMLMKVFASNAMLEHAYYVFVSAKDVGIELNIMCCNFLLKCLVEANRVDGMRCLFEDLKNFGPTPNIHTYTIMMNFYCRDVGCSVDIRRASEILGKIYGSGETPNIVTYSTYIKGLCKIGSFKVAWKLISNLHHKNQPLNSHCFNAVIYGLCQRGSVDEASGVLEEMKNFGVLPDFYSYSILIDGFCSEGGMDSAVKILKEMSSNNIAPSAFSCCSLIREFYKLRRFTKALEVFSIMQKHGIWPDTIACNHILSIYCRESDFNEALVLSEEFQEHGVNLNPHSYNEFIHKLCRESFPKKALELLPIMLKRNVLPGVVNYSTLISGIAKQSNPKKAVMLFTRMTKVGITFNVKTYTILIDLCTRYCGMLRAYYLFEEMQERRVYPDQISYTTLITAFCNTGEMVKARALFDEMLREGCSPNVITYTCMISGYWKLNMMDQVKKLYSEMKEKGVYPDEIAYTTLIAVFCSAREMILAQALFDEMLREGYSPNVILYTCMINGYWKLNMIDRAKKLYDEMKENGVYPDQIAYTTLIAAFCNAREMIMARTLFDEMLRKGYPPNVALSRLPLYPAEICIVEGDPGKLHIVILPLVGKILNIERRDETAIYKNEEIQHSIIGLGLRVKGEDI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01242 739 Gene3D Tetratricopeptide repeat domain 476 584 IPR011990 GO:0005515
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 671 IPR002885 -
Tsu05g01242 739 SUPERFAMILY Type II DNA topoisomerase 683 737 IPR013760 GO:0003918|GO:0005524
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat 219 242 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat 325 354 IPR002885 -
Tsu05g01242 739 Gene3D - 682 738 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Tsu05g01242 739 Pfam PPR repeat 562 594 IPR002885 -
Tsu05g01242 739 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 287 564 - -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 499 533 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 325 357 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 465 497 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 534 568 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 570 603 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 360 392 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 605 637 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 255 287 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 640 673 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Tsu05g01242 739 TIGRFAM PPR: pentatricopeptide repeat domain 431 462 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat family 601 650 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat family 252 300 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat family 143 191 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat family 426 473 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat family 356 405 IPR002885 -
Tsu05g01242 739 Pfam PPR repeat family 496 543 IPR002885 -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Tsu05g01242 739 Gene3D Tetratricopeptide repeat domain 364 475 IPR011990 GO:0005515
Tsu05g01242 739 Gene3D Tetratricopeptide repeat domain 85 195 IPR011990 GO:0005515
Tsu05g01242 739 Gene3D Tetratricopeptide repeat domain 585 678 IPR011990 GO:0005515
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Tsu05g01242 739 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 628 673 - -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Tsu05g01242 739 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 287 564 - -
Tsu05g01242 739 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 554 634 - -
Tsu05g01242 739 Gene3D Tetratricopeptide repeat domain 196 342 IPR011990 GO:0005515
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Tsu05g01242 739 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 628 673 - -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Tsu05g01242 739 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 63 301 - -
Tsu05g01242 739 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 554 634 - -
Tsu05g01242 739 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 63 301 - -
Tsu05g01242 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01242 Tsu-Chr5 11168310 11172657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01242 497 675 Glycosyltransferase AT1G05670 26.087 1.04e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01242 - - mtr:MTR_5g029690 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01242 05 11168310 11172657 Tsu05g01242 05 11168310 11172657 ECH