Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01236 ATGTCGATAAAAACTGTTAAAGTCAGTAATGTTTCCTTGGGAGCAACCGAGCGGGACATTCAggagttcttttctttttctggtGACATTCATTATGTTGAACTAAGGAGTTATGATGAACGATCTCAAATTGCTTATGTTACCTTCAAGGATTCACAGGGAGCTGAGACTGCAGTATTGCTATCGGGAGCAACAATAGTTGACCTGTCGGTTACAATAACTTTGGATCCAGATTACAAACTTCCACCTGGTGTCGTGGTTCCATCTGGAAATGAAACACAATCTCCTGGTGGGGCTGAATCTGCTTTGCGAAAGGCAGAAGATGTAGTCTCCAGCATGGTAGCCAAAGGCTTTATCTTAGGGAAAGATGCTGTCAACAAAGCAAAGACTTTTGATGAGAAGCTCCAGTTATCATCAACAGCATCAGCAACAGTTGCATCTTTTGACCAAAAACTTGGGCTTAGTGAGAAAATAGGTGCTGGTGCTTCAGTTGTGAGTGATAAAGTTCGTGAAGTGGATCAAAAGTTTCTTGTTTCAGAAAAGACAAAAACAGCATTTGCAGCCGCAGAACAGACAGTCAGCAGTGCTGGTTCTGCCATAATGAAGAATCGCTATATACTTACTGGGGCTACTTGGGTAACAGGTGCTTTTAGTCGGGTTTCTAAGGCAGCTGTGGAAGTAGGTCAGAAAACAAAAGAGAAGGTGGAGAATGCAGAACAGCAAGAGAAGCGAGAGGTTGAAGATCAGCATGCAAAGGTCCATTCCGAGTCCCCAAAACCAGCAGCGGCAAGTGACCAGCAGTCTCCCAGGCGTGGTCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 846 0.4362 MSIKTVKVSNVSLGATERDIQEFFSFSGDIHYVELRSYDERSQIAYVTFKDSQGAETAVLLSGATIVDLSVTITLDPDYKLPPGVVVPSGNETQSPGGAESALRKAEDVVSSMVAKGFILGKDAVNKAKTFDEKLQLSSTASATVASFDQKLGLSEKIGAGASVVSDKVREVDQKFLVSEKTKTAFAAAEQTVSSAGSAIMKNRYILTGATWVTGAFSRVSKAAVEVGQKTKEKVENAEQQEKREVEDQHAKVHSESPKPAAASDQQSPRRGPAPAQGLIL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01236 281 PANTHER BINDING PARTNER OF ACD11 1 1 263 - -
Tsu05g01236 281 Gene3D - 2 74 IPR012677 -
Tsu05g01236 281 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 263 - -
Tsu05g01236 281 Coils Coil 232 252 - -
Tsu05g01236 281 SMART rrm1_1 5 74 IPR000504 GO:0003723
Tsu05g01236 281 SUPERFAMILY RNA-binding domain, RBD 3 77 IPR035979 GO:0003676
Tsu05g01236 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Tsu05g01236 281 MobiDBLite consensus disorder prediction 228 281 - -
Tsu05g01236 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Tsu05g01236 281 MobiDBLite consensus disorder prediction 228 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01236 Tsu-Chr5 11130396 11134460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01236 - - mtr:MTR_5g029640 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01236 05 11130396 11134460 Tsu05g01236 05 11130396 11134460 ECH