Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01214 ATGTTAATTTTTCACTTCGTTGTCTTTACTTTCAGGCTCATAATATTAGCTCGGTTGGTGGTGCTCATTTTCTTCCTTAAGTGGAGGGTAGAAAACCCCAATGAAGATGCAATGTGGCTGTGGGGGATGTCTGTAGTTTGTGAAATCTGGTTTGCATTTTCCTGGCTTCTTGACCAGCTTCCTAAGCTGTTTCCAATAAACCGTGTTGCTGATCTTGACGTTTTGAAAGAGAAGTTCGAAACTCCTAGTAAAGACAACCCAACAGGAAAATCTGATCTTCCGGGAATTGATATGTTTGTGTCAACGGCGGATCCAGAAAAAGAACCGCCGCTTGTCACTGCAAATACAATTCTTTCGATTCTAGCTTGCAATTATCCGGTCGATAAACTTTCATGCTATGTCTCTGACGATGGTGGCTCGCTTCTTACTTTCGAGGCCATGGCTGAGGCAGCAAGTTTTGCCGAATTGTGGGTTCCATTTTGTCGGAAGCACGATATTGAACCGAGGAACCCGGAATCTTATTTTAGTCTGAAGAGAGATCCATACAAGAACAAAGTACGTTCTGACTTTGTAAGGGACCGTAGGAAGGTGAAGCGCGAGTATGAGGAATTCAAGGTTCGGATTAATGGTCTTCCTGATTCAATCCGGAGACGTGCTGATGCTTATAATGCTAGAGAGGAGATCAAAGCTATGAAGCAGTGGAGAGAGGCTGGAAATGATGTTGAACTGATGGAGAGTTTGAAAGTTTCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCTGGGACTTGGACAACTCCTGCACCCGAGCATTCTCGGGGTGATCATTCCAGTATCATACAGGTAATGTTGAAACCTCCAAGTGGTGAGCCACTGACCGGCGCAGAATCAGAGTCAAATGCAATGGATTTGACTGAAGTTGATATTCGTCTTCCTATGCTTGTCTATGTTTCTCGTGAAAAACGACCTGGCTATGATCACAACAAGAAAGCCGGGGCCATGAATGCCCTGGTTCGAGCTTCAGCTATTATGTCCAATGGACCTTTCATACTTAATCTTGACTGTGACCATTACATATACAACTCCGAGGCAGTGAGGGAAGGTATGTGCTACATGATGGACCGTGATGGTGATAGAATCAGCTATGTTCAATTTCCTCAAAGGTTTGAAGGAATCGACCCTTCTGATCGCTATGCTAATCATAACACTGTCTTCTTTGACGTCAATATGCGAGCTCTTGATGGTATTCAGGGTCCTGTATATGTCGGTACCGGATGCCTATTTCGAAGAACTGCACTTTATGGCTTTGATCCACCTCGGCTGGAAGAAGAGGGCACCGGTTGGTTTGGTAGTAAGAAAAAGAAATCCTCAACAGTTGCCTCAGTACCTGAAGTAGAATCTCTAGAGGAACCTGAAGTAGATTCTCTAGAGGAACAATCTTTGCATAATGGTAGcattgatgatgaagaattgagcAGTGCTCTCATTCCAAAGAAATTTGGAAATTCGAGTCTTTTTATTAAGTCAATCAGAAAGGCAGAGTCCCAAGGTAGACCACTTGCAGATCACTCGTCTATCAAGAATGGACGTAAGCCTGGTGCTCTGACAAATCCTCGAGTTCTTCTCAGTGCTGTTACTGTTGCTGAAGCCATCAACGCCATCTCTTGCTGGTATGAAGATAAGACTGAATGGGGAGATAGAGTCGGATGGATTTACGGTTCTGTAACCGAGGATGTTGTGACTGGTTATAGAATGCACAATAGAGGATGGAGGTCTGTATATTGTGTGACAAAGAGGGATGCCTTCCGGGGTACTGCTCCAATCAATCTTACTGACCGGCTTCACCAAGTTCTTCGATGGGCAACTGGCTCAGTCGAAATATTCTTTTCGCGCAACAACGCTCTTTTGGCCAATTCTAGATTGAAATTCTTACAAAGGATTGCTTACCTTAATGTTGGAATCTATCCATTCACTTCATTCTTCCTTATTGTTTACTGCTTCCTCCCGGCTCTTTCGCTTTTCACAGGTCAGTTCATAGTCCAATCCCTGAAAGTAACTTTCTTAGTCTACCTCTTGGGAATCACAGTCACACTTATTCTTCTCGCTATTCTCGAGATCAAATGGTCCGGTATCGAACTCGAAGAATGGTGGAGGAACGAACAATTTTGGCTAATTGGAGGCACAAGTGCACATTTTGCCGCTGTTCTTCAAGGTCTACTTAAGGTATTAGCTGGCATTGAGATTTCATTCACattaacatcaaaatcatcCGGCGACGATGAAAACGACGAATACGCCGATCTATACATCATCAAATGGAGCTCGTTGATGATTCCACCACTCACAATCATGATGGTTAATGTAATCGCTATCGCAGTTGCGGTTAGTAGGACTATATACAGCGATGATCGTCAATGGAGTAGTTTACTCGGAGGCGTATTCTTTAGTTTTTGGGTCTTAGCTCATTTATATCCAtttgcaaaaggacttatgggtAGAAGAGGTAGAACACCAACTATAGTGTTTGTTTGGTCAGCTTTAATATCAATCACTATATCACTTCTATGGGTTGCTATTGATCCACCTTCTGGTAATAATCAAATTGGAGGATCATTTCAATTCCCTTGA 2631 0.4238 MLIFHFVVFTFRLIILARLVVLIFFLKWRVENPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLFPINRVADLDVLKEKFETPSKDNPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILACNYPVDKLSCYVSDDGGSLLTFEAMAEAASFAELWVPFCRKHDIEPRNPESYFSLKRDPYKNKVRSDFVRDRRKVKREYEEFKVRINGLPDSIRRRADAYNAREEIKAMKQWREAGNDVELMESLKVSKATWMADGTHWPGTWTTPAPEHSRGDHSSIIQVMLKPPSGEPLTGAESESNAMDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSEAVREGMCYMMDRDGDRISYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRLEEEGTGWFGSKKKKSSTVASVPEVESLEEPEVDSLEEQSLHNGSIDDEELSSALIPKKFGNSSLFIKSIRKAESQGRPLADHSSIKNGRKPGALTNPRVLLSAVTVAEAINAISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLANSRLKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFTGQFIVQSLKVTFLVYLLGITVTLILLAILEIKWSGIELEEWWRNEQFWLIGGTSAHFAAVLQGLLKVLAGIEISFTLTSKSSGDDENDEYADLYIIKWSSLMIPPLTIMMVNVIAIAVAVSRTIYSDDRQWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSALISITISLLWVAIDPPSGNNQIGGSFQFP 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01214 876 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 294 446 IPR029044 -
Tsu05g01214 876 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 7 874 - -
Tsu05g01214 876 SUPERFAMILY Nucleotide-diphospho-sugar transferases 111 440 IPR029044 -
Tsu05g01214 876 Pfam Cellulose synthase 96 867 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu05g01214 876 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 874 - -
Tsu05g01214 876 MobiDBLite consensus disorder prediction 461 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01214 Tsu-Chr5 10792652 10795693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01214 7 876 Glycosyltransferase AT3G03050 78.196 0.0 1423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01214 K20924 - gmx:100813900 1510.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01214 05 10792652 10795693 Tsu05g01214 05 10792652 10795693 ECH