Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01172 ATGGATCATAGTAGAGGAGATAGTTGGAGAGGATTGGTGAATAATATGCTTCCTCCTGGTGCTTCTGTTCCTGATGATGTTACTAATTCTGATTACTCCGTAGCTTTGGAATATTTAGGTCCACCGGTTCCATATGAAGTACCGAAAATCGAGCCGTTAGGTGTCAAATCAAGAGCAGTTGAACGGATTCCTCTACCGATGTCTCGTATTACCGGTGTGACGGGATCTCCTAATCATAGTCCGAGGGTGTCGGGAAGTTCAGAATCTGTGGTTTCTGTGTTACTAAACCCGGATCTTTCTTCCGGTTCGCCTTCTGCTTCACCTGCTTCGGTTCATAATCCTTCAAATGTTAGTTCTAGGCCGGTGATTAATGAAGCAAAGAGGGTGCCTGTTGTGACGTTTAATACGGTTGAAAGGTCTCAGATGAAAGAGTCGGTGGAAGTTGTGAAGCCGGTGTATCCGGAATACGTTGGAGTtgtgaaagaaaagaagaaaaagaaaataagagttTGTTATAGGTGTGGAAAAGGGAAGTGGGAAACTAAAGAGTCTTGCATAGTTTGTAACGCTAAGTATTGCAGCAACTGTGTGCTTAGGGCAATGGGATCGATGCCTGAAGGGCGTAAATGTGTAACATGCATTGGCCAGCCTATAGACGAATCAAAGCGCTTGAAATTGGGTAAATATTCGAGGGTGTTGTCCCGACTTTTGAGTCCTCTAGAAGTTAAGCAAATTATGAAAGCAGAGAAAGAATGTTCGGCTAATCAGCTTCAGCCGGAGCAGTTGAGTGTCAATGGATTGCCTCTGAAGCCTGACGAAATGGCAGAATTACTTGGATGCCCCTTACCTCCCCGTAAGCTCAAGCCTGGTAGATATTGGTACGACAAAGAATCCGGTCTATGGGGAAAGgaAGGTGAAAAACCTGACAGAATCATTAGTTCAAACTTGAATTTCTCTGGCAAACTTAGCACTGATGCTAGTAATGGAAACACCGAGGTCTACATGAATGGTCGAGAGATTACAAAACTCGAATTGAGGGTACTTAGGCTGGCAAACGTGCAGTGTCCACGTGATACTCACTTTTGGGTTTACGATGATGGTCGTTACGAGGAGGAAGGTCAAAAGAATATACGAGGAAACATATGGGAGAAGGCATCAACAAGATTTGTTTGTGCCCTATTCTCTCTACCTTTTCCTCATGGACAGCCTCATGGTTCAAGAGACGAGGCTAGTAATTATACCACAATTCCTAAATATCTGGAACAGAAAAAAACTCAGAAGCTTCTTCTTCTTGGAATTCAAGGAACTGGAACTAGCACTATGTTTAAGCAGGCCAAATTTTTATACGGGAACAAATTTACCGCTCAAGAGCTGGAGGACGTTAAGCTGATGATACAAAGTAACATGTACAAATATCTTAGCATTTTACTTGATGGAAGAGAGCGCTTTGAAGAGGAGGCTGTTTCTAGAATGAATGGACAAAGTTCTCCTGCTCAAATTACGGAAGCCGGTAGCAATGGCGAAGCTAGTAATACTAGTGAATGTGTCTATTCTCTCAACCCAAGGCTAAAACATTTTTCCGACTGGCTCTTGGACATTATAGCCACTGGAGATTTAGATGCATTCTTCCCTGCAGCGACACGTGAATATGCACCATTAGTTGAAGAAGTGTGGAAAGATCCGGCAATACAAGaaacattcaaaagaaaagacgAACTTCACTTCCTTCCAGATGTTGCAGAGTACTTCTTAAGCCGGgcTGTTGAGATATCTAGCAATGAGTATGAACCTTCTGAAAGGGACATACTATATGCAGAAGGAGTTACTCAAGGAAATGGTTTGGCGTTCATGGAATTCTCGCTCGATGATCGTTCCCCAAAGTTTGAAACTTATACAGATAACCTTGATGCTCAGTTGCCACCTCAGACCAAGTACCAACTCATAAGGGTGAATGCCAAGGGCATGAGTGAGGGTTGCAAGTGGGTTGAAATGTTCGAAGATGTTAGAGCGGTCGTCTTTTGTGCTTCCCTAAGTGACTATGATCAGTTATGTCTTACACCAGACAGCAGCGGCAGCGGAACACTTCTCCAAAACAAGATGATACAAAGCAAGGAACTATTCGAAACAATGGTGAGACACCCTTGTTTCAAAGACACCCCTTTGATACTTGTTCTTAACAAATACGACATCTTTGAGGAAAAGATGAAAAGAGTATCCCTAAACGCATGTGAATGGTTCAACGATTTTTCTCCCGTACGAGCGCACGACAACTACCAGTCACTAGCACATCAAGCTTACTTCTATGTCGCAATGAAATTCAAAGACCTCTATGCGTCCATCACAGGAAAGAAACTTTTCGTTGCGCAAGTAAGAGCGAGGGAAAGAATAACCGTTGACGAAGCGTTCAAGTACATAAAAGAGGTTCTTAAATGGgatgatgagaaagatgaaaatTACTATGGTCCACCTGAGGATTCCATTACAGACATGAGTTCCTCTTTTTATGTTAGACAAGAGGAGTAA 2523 0.4182 MDHSRGDSWRGLVNNMLPPGASVPDDVTNSDYSVALEYLGPPVPYEVPKIEPLGVKSRAVERIPLPMSRITGVTGSPNHSPRVSGSSESVVSVLLNPDLSSGSPSASPASVHNPSNVSSRPVINEAKRVPVVTFNTVERSQMKESVEVVKPVYPEYVGVVKEKKKKKIRVCYRCGKGKWETKESCIVCNAKYCSNCVLRAMGSMPEGRKCVTCIGQPIDESKRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLQPEQLSVNGLPLKPDEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFSGKLSTDASNGNTEVYMNGREITKLELRVLRLANVQCPRDTHFWVYDDGRYEEEGQKNIRGNIWEKASTRFVCALFSLPFPHGQPHGSRDEASNYTTIPKYLEQKKTQKLLLLGIQGTGTSTMFKQAKFLYGNKFTAQELEDVKLMIQSNMYKYLSILLDGRERFEEEAVSRMNGQSSPAQITEAGSNGEASNTSECVYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPDVAEYFLSRAVEISSNEYEPSERDILYAEGVTQGNGLAFMEFSLDDRSPKFETYTDNLDAQLPPQTKYQLIRVNAKGMSEGCKWVEMFEDVRAVVFCASLSDYDQLCLTPDSSGSGTLLQNKMIQSKELFETMVRHPCFKDTPLILVLNKYDIFEEKMKRVSLNACEWFNDFSPVRAHDNYQSLAHQAYFYVAMKFKDLYASITGKKLFVAQVRARERITVDEAFKYIKEVLKWDDEKDENYYGPPEDSITDMSSSFYVRQEE 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01172 840 SUPERFAMILY Transducin (alpha subunit), insertion domain 453 605 IPR011025 GO:0007165
Tsu05g01172 840 Gene3D - 455 606 IPR011025 GO:0007165
Tsu05g01172 840 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 21 835 - -
Tsu05g01172 840 MobiDBLite consensus disorder prediction 815 840 - -
Tsu05g01172 840 MobiDBLite consensus disorder prediction 69 88 - -
Tsu05g01172 840 MobiDBLite consensus disorder prediction 490 511 - -
Tsu05g01172 840 MobiDBLite consensus disorder prediction 825 840 - -
Tsu05g01172 840 ProSiteProfiles G-alpha domain profile. 424 820 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 21 835 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 Gene3D - 619 818 IPR027417 -
Tsu05g01172 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 812 IPR027417 -
Tsu05g01172 840 SMART galpha_1 410 790 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 CDD G-alpha 426 812 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 Pfam G-protein alpha subunit 422 808 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 MobiDBLite consensus disorder prediction 95 122 - -
Tsu05g01172 840 MobiDBLite consensus disorder prediction 71 88 - -
Tsu05g01172 840 PRINTS Alpha G protein (transducin) signature 721 730 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 PRINTS Alpha G protein (transducin) signature 668 696 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 PRINTS Alpha G protein (transducin) signature 427 442 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 PRINTS Alpha G protein (transducin) signature 595 617 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Tsu05g01172 840 SUPERFAMILY FYVE/PHD zinc finger 154 214 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01172 Tsu-Chr5 10344899 10350901 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01172 - - gmx:100794534 1407.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01172 05 10344899 10350901 Tsu05g01172 05 10344899 10350901 ECH