Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01139 ATGTCGTCTAAGGTCGTTTATGAAGGTTGGATGGTAAGGTATGGCCGGAGGAAAATCGGTCGATCGTTCATCCACATGAGGTACTTCGTGCTGGAGTCGCGATTACTTGCTTATTACAAGAGAAAACCGCAGGATAATCAGGTTCCTATTAAGACACTGCTAATTGATGGAAACTGTAGAGTGGAGGATAGAGGATTGAAGACCCATCATGGACATATGGTATATGTTTTGTCTGTTTacaacaagaaagaaaagaaccatcGGATTATGCAGATGGCTGCTTTTAACATCCAAGAGGCCCTACTctggaaagaaaaaattgagtatGTCATTGATCAGCATCAGGGGGCACAACCATCAAATGGcaacaaatatatttcttttgaatACAAATCTGGGATGGACAATGGGAAGACGGCTTCTTCCTCAGACCGTGAAAGCCAGTTCAGTGCTCAAGAGGATGATGATGAGCCACATTCAAATTTGTTAAGGAGGACAACAATTGGAAATGGGCCTCCAGAATCAATTTTTGACTGGACGCGAGAAATAGATTCAGAATTGTCAAATCAGAATGTCAATAACCAAGCTTTCTCAAGGAAGCATTGGCGTCTTTTGCAATGCCAAGATGGACTTCGTGTTTTTGAAGAACTTCTTGAAGTTGATTACCTTCCAAGGAGCTATAGCAGAGCGATGAAAGCAGTGGGTGTTGTGGAGGcctcttgtgaagaaattttCGAGCTTGTGATGAGCATGGATGGGACACGGTTTGAATGGGATTGCAGTTTCCAGGAAGGTAGGTTAGTTGAGGAGGTGGATGGGCATACAGCAATTCTTTATCACCGACTTCAGTTGGACTGGTTCCCCATGTTTGTGTGGCCCCGTGATCTTTGTTATGTACGTTACTGGCGTCGAAATGATGATGGAAGTTATGTTGTTTTATTTCGCTCTAGAGAACATGAGAACTGTGGTCCACAACCAGGGTGTGTTCGGGCACATATTGAGAGTGGAGGATATAATATCTCCCCCTTAAAACCTCGAAATGGGAGGCCTAGGACACAAGTTCAGCATCTTATGCAGATTGATCTGAAGGGTTGGGGTGTGAGTTATATACCATCTTTCCAGCAGCATTGTCTCCGCCAACTGTTAAATAGTGTAGCTGGTTTACGTGAATGGTTTGCCCAGTCAGATGAAAGGAATGCTCCTCCACGAATTCCTGTCATGGTTAATATGTTCTCAACATCTGTTACTTCAAAGAAGAATCAAAAGACAAATGATATTTCTACTAATTCTACTTCTCTCGATCAAAATGCTGCAAGCAGAAATTCTGTTTTGATGGATGATTATTCTGATGAAGATGAGGATTTTCAAATAGCAGAACCAGATCAAGAGGCATTCCAAACTGGTCATGACAGTGATGTTAGAAAAACAGCCTTGGAAGAAGAGCCTGATGATGAGATTGACTTATCTTCCTTTTCGGGTAATTTACGCCGAGATGATCGTGATAATGCTCGGGATTGCTGGAAGATATCTGATGGAAATAACTTTAGAGTCAGAAGCAAGCATTTTTGCTATGACAAGTCAAAGGTTCCTGCAGGAAAACATCTGCTGGATCTTGTTGCTGTTGACTGGTTTAGGGACTCAAAAAGAATGGACCATGTGGCCAAGCGTCACGGTTGTGCAGCACAAGTTGCGTCTGAAAAGGGATTTTTCTCCATTATCATTAATCTTCAGGTGCCAGCGTCATCACATTACAGTatggtattttattttgtgaccAAAGAGTTAGTTCCTGGAACACTGTTGCAACGCtttgttgatggtgatgatgaattCCGAAACAGCAGGTTGAAGCTCATCCCATCAGTCCCAAAGGGTTCATGGATTGTACGCCAAAGTGTTGGGAGCACTCCTTGTTTACTGGGAAAGGCAGTTGATTGCAACTATATTCGTGGTCCGAAGTATTTAGAAATTGATGTTGATATTGGTTCTTCTACTGTTGCTAATGGAGTTTTGGGGCTAGTTATTGGTGTGATTACAACATTGGTGGTTGATATGGCTTTTCTTGTACAGGCAAATTCTTCTGATGAGTTACCTGAGAGGCTTATTGGAGCTGTTCGAGTTTCTCATTTAGAGCTCAAATCTGCCATAGTACCAAATCTGGATTCAGATCCATCATGA 2178 0.4036 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKRKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKNHRIMQMAAFNIQEALLWKEKIEYVIDQHQGAQPSNGNKYISFEYKSGMDNGKTASSSDRESQFSAQEDDDEPHSNLLRRTTIGNGPPESIFDWTREIDSELSNQNVNNQAFSRKHWRLLQCQDGLRVFEELLEVDYLPRSYSRAMKAVGVVEASCEEIFELVMSMDGTRFEWDCSFQEGRLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHIESGGYNISPLKPRNGRPRTQVQHLMQIDLKGWGVSYIPSFQQHCLRQLLNSVAGLREWFAQSDERNAPPRIPVMVNMFSTSVTSKKNQKTNDISTNSTSLDQNAASRNSVLMDDYSDEDEDFQIAEPDQEAFQTGHDSDVRKTALEEEPDDEIDLSSFSGNLRRDDRDNARDCWKISDGNNFRVRSKHFCYDKSKVPAGKHLLDLVAVDWFRDSKRMDHVAKRHGCAAQVASEKGFFSIIINLQVPASSHYSMVFYFVTKELVPGTLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANSSDELPERLIGAVRVSHLELKSAIVPNLDSDPS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01139 725 CDD START 194 370 - -
Tsu05g01139 725 SUPERFAMILY PH domain-like 3 116 - -
Tsu05g01139 725 SUPERFAMILY Bet v1-like 186 376 - -
Tsu05g01139 725 MobiDBLite consensus disorder prediction 148 162 - -
Tsu05g01139 725 CDD PH 7 107 - -
Tsu05g01139 725 Gene3D - 1 121 IPR011993 -
Tsu05g01139 725 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 4 722 IPR045096 -
Tsu05g01139 725 SMART START_1 182 394 IPR002913 GO:0008289
Tsu05g01139 725 MobiDBLite consensus disorder prediction 136 175 - -
Tsu05g01139 725 ProSiteProfiles START domain profile. 179 384 IPR002913 GO:0008289
Tsu05g01139 725 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 507 710 IPR009769 -
Tsu05g01139 725 MobiDBLite consensus disorder prediction 415 438 - -
Tsu05g01139 725 ProSiteProfiles PH domain profile. 4 112 IPR001849 -
Tsu05g01139 725 SMART PH_update 5 114 IPR001849 -
Tsu05g01139 725 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2-LIKE 4 722 - -
Tsu05g01139 725 Gene3D - 202 402 IPR023393 -
Tsu05g01139 725 Pfam START domain 227 370 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01139 Tsu-Chr5 9983558 9995538 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01139 - - gmx:100806401 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01139 05 9983558 9995538 Tsu05g01139 05 9983558 9995538 ECH