Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01116 ATGGGTAAAGGTAATCCACAGAAATCAGGCCCCGGCGGCGACCTTCATACAGCTGCAAGGTCCGGTGATCTCATAGCCGTTCAGtcaattttgatttcaaatcCTTTGTCTGTTAATTCCAGAGATAAACATTCCAGAACACCACTACATTTAGCAGCATTTTCTGGGCAAACAGAGGTAGTCAATTACCTCTGCAAGAACAAGGCTGATGTTGGTGCTTCTGCTATGGATGACATGGCTGCGATACACTTTGCGGCACAGAAGGGACATTTAGAAGTTGTTAGGGCTCTGGTTTCAGCTGGTGCCTCTTTCAAATCCTCTACTCGTAAAGGGGTGACTCCATTACACTTTGCTGCTCAAGGTTCCCATCTCGAACTTGTCAAGTATTTGGCCAAGAAAGGGGCAAGTCTCACCATCAAGACAAAGGCGGGAAAGACCCCTTTGGATCTTGCTACCAATGATGAAGTCCGCACCTTTCTGGAGGGATTTAAAAAATCAGATAAGAATGAAGAGTCGAGAAACGAAGATAAAGCCGAAGGATCTGatccaaaagaaaatgaagaatcaGATACAAAGGCAGCTGAAGAATCTGATCCAAAGGCATCATCCTCTTTGGGATCTGAAGGTAATTTGAGTAGTGAACCTCCTGCAGCTGCTGTTGATGAAGAAAAtggtgagagagagaagaggaagaGTACTGAAGATGTTGCAAGGGAAGACTCATCACAACCGAAAAAGGCGAAAGTTACGTTAAGCCACCTCCAAAGTTCAGATGATGCCGAAGAAGAAGACAACTTGTAG 801 0.4195 MGKGNPQKSGPGGDLHTAARSGDLIAVQSILISNPLSVNSRDKHSRTPLHLAAFSGQTEVVNYLCKNKADVGASAMDDMAAIHFAAQKGHLEVVRALVSAGASFKSSTRKGVTPLHFAAQGSHLELVKYLAKKGASLTIKTKAGKTPLDLATNDEVRTFLEGFKKSDKNEESRNEDKAEGSDPKENEESDTKAAEESDPKASSSLGSEGNLSSEPPAAAVDEENGEREKRKSTEDVAREDSSQPKKAKVTLSHLQSSDDAEEEDNL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01116 266 Pfam Ankyrin repeats (3 copies) 15 73 IPR002110 GO:0005515
Tsu05g01116 266 Pfam Ankyrin repeats (3 copies) 77 140 IPR002110 GO:0005515
Tsu05g01116 266 PANTHER ANKYRIN REPEAT PROTEIN 1 264 - -
Tsu05g01116 266 SUPERFAMILY Ankyrin repeat 15 153 IPR036770 -
Tsu05g01116 266 ProSiteProfiles Ankyrin repeat region circular profile. 77 103 - -
Tsu05g01116 266 MobiDBLite consensus disorder prediction 162 197 - -
Tsu05g01116 266 MobiDBLite consensus disorder prediction 162 266 - -
Tsu05g01116 266 Gene3D - 12 184 IPR036770 -
Tsu05g01116 266 PANTHER - 1 264 - -
Tsu05g01116 266 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Tsu05g01116 266 ProSiteProfiles Ankyrin repeat region circular profile. 44 71 - -
Tsu05g01116 266 PRINTS Ankyrin repeat signature 45 60 IPR002110 GO:0005515
Tsu05g01116 266 PRINTS Ankyrin repeat signature 126 140 IPR002110 GO:0005515
Tsu05g01116 266 ProSiteProfiles Ankyrin repeat profile. 110 142 IPR002110 GO:0005515
Tsu05g01116 266 MobiDBLite consensus disorder prediction 220 246 - -
Tsu05g01116 266 ProSiteProfiles Ankyrin repeat region circular profile. 110 142 - -
Tsu05g01116 266 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Tsu05g01116 266 SMART ANK_2a 110 139 IPR002110 GO:0005515
Tsu05g01116 266 SMART ANK_2a 44 73 IPR002110 GO:0005515
Tsu05g01116 266 SMART ANK_2a 77 106 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01116 15 255 Miscellaneous Gene Families AT5G60070 27.778 1.06e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01116 - - mtr:MTR_5g026800 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01116 05 9754187 9756273 Tsu05g01116 05 9754187 9756273 ECH