Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01017 ATGAACTTCAGCGTTGTTCAGAGAAAAAAGGTTCCTTTTTTCCCACGTCAACCTTCTCTGCTTTCATGTTATTGTCGCCGGTTTTGCATCGCCATTCATCTGTTCGATAAAATGCCACAAAGGGATTTTTTTGTAAGAGACGTTCATTTTGAGCTTGTTGCCGATTGCATTAAATTGTCCCTCAAAAAACCTAACATTGTGACTGCCACTGTTGTCCATTGTGCTGCCTTGAAGATAGGTGCTCTAGCATACCTTCCTACTTCGACATCTCTACTCACTCTCTATTCCAAAGCTGGAAGCTTTACCTCATCTAGGGTTTTATTTGAAGACATTCAGATTAGAGATGTGATTGTTTGGAATGCAATTATTTCGGCATCTCTTGAAAACAAGTGCTATAGGACAGCAGTGGAGTTCTTTGAGAAAATGATCAAGGTTCAAACTAGGTTTGATTCCACCACTCTGTTGCTTATGGTATCAACTTTGTCACACATGAAAAACTTTGATCAAGGAAGGGTAATTCATTGTGTGAGTATAAAATCTGGGATGCTTGTGGATATTAGTTTATGTAATGCTCTTATTAACATGTATGCGAAGTGTGGTGACCTAAATTCTTTTGATTCTGAGTGTCTATTTGAAGAGATGGAATATAAAGATGTTGTCTCGTGGAACTCGATAATGAGAGGATGTCTTTACAACGGCGATTCGGAGAATTCGTTGTATTACTTCAGAAGGATGAATTTTTCGGAAGAAACAGCGGACCATGTCACCCTTTCTTGTGCTATTTCGGCATGTGCGAGTTTGGGAGAATTGGCTTTTGGAGAATGCATTCATGGTCAAGGAATCAAGCTAGGGTACAAGGATAGCTCTCATGTTTCGGTTGCGAACTCTCTCATTTCGTTATATTCACAATGTGAAACCGTGGAGGTTGCCGAGACTGTATTCAGAGAAATAGCATACAAAGATATTGTTTCTTGGAATACAATGATGGAAGGATATGCTTCGAATGAAAATATTCATGAAGTATTTGATCTTATGGTTGAAATGCAAACTACAGGATCTTTCCAACCTGATATAGTAACACTAGCTACCATACTTCCACTTTGTGCAGATCTAATGCTCTCTAGAGAAGGAAGAGCTATCCATGGATATGCAATTAGAAGACAGATGTTATCTGATCATCTTCCTTTGCGGAACAGCCTTATAGACATGTATTCGAAGTGCAACCTTGTCGTGAAAGCCAAGATCTTGTTCCGTTCTACAAAAGAGAGAGACTTGGTCTCTTGGAATGCAATGATATCTGGCTATTCCTTGAACAAGTATTCTGAAAAGGCTCAAAATTTGTTCAAGGAACTCTTATGCTGCAGTCCAAATTTCAGCTCATCAACTGTTTTCGCCATTCTATCTTCCTGCAACTCTCCGAATAGTCTCAACTTTGGGAAATCAGTTCACAGCTGGCAATTAAAATCTGGTTTTTTGAACCACATTCTCTTAGTAAATTGTCTCATGCAAATGTATATCAATTGTGGAGACCTAACTTCTGGTTTCTCAATTTTGCAAGAGAATTCTTCTATAACAGATATTGCTTCATGGAACACTATAATTATAGGTTGTGTAAGAGGTGAACATTTTCAAGAGGCTTTAGAGACTTTCAGGTTAATGAGGCAAGGACCTTCCTTCAACTATGACTCCATAACCCTTGTAAATGTTTTATCAGCAATTGCAAACATGGAACTACTCAACCAAGGAAAGTCTCTTCACAGCATTGCACTTAAATCTCCTTTAGGATCGGATACACGTGTTCAGAACTCGTTAATTACCATGTATGACAGATGCAGCGACATCAACAGTGCTAGAAAAGTGTTCAAATTCCATTCTAGTTCCAATCTATGCACATGGAACTGCATGATCTCAGCTTTATCACATAACAAGGAAAGTAGAGAAGCATTGGATTTATTCCGCCGTCTTCAGTTTAAACCAAATGAGTTCACCATCGTTAGTGTTCTCTCCACGTGCACTCAAATCGGTATTCTAAGACACGGAAAACAGGTTCATGGTTACATGTTCAGGAATGGATATCAAGAAAATTCGTTTATATCAGCAGCTCTTGTAGACTTGTACAGCAACTGTGGAAGACTGGACAATGCTCTCAAAGTATTCAGACATTCGCAGAAGTCAGAATCTGCTTGGAATTCAATGATTGCTGCATATGGTAATCATGGAAATGGTGAAAAAGCAATCAAACTGTTCCATGAGATGTGTGAGTCAGGAACAAAAGCGACCAAAAGCACATTTGTTAGCCTTTTATCTGCATGCACCCATTCAGGACTTGTGAACCAAGGACTTCGGTACTATGAATGTATGTTGGAGAAATATGGCATAAAACCTGAAGCTGAGCATCAAGTTTATGTGGTTGACATGTTAGGAAGATCAGGTAgaattgatgaagcttatgagttTACTAAAGGGTTGAAACCCAATGCAAGTTCAGGTGTATGGGGAATGCTTTTGAGTGTATGCAACTATCATGGGGAAATTAAGTTAGGGAAAAAAGTTGCTGAAAAACTCTTTGAAATGGAACCTCAAAATGTTGGATATTATATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCTACTGAGTTGAGACAATCTGTCTATGACCAAAGATTGAGAAAATGTGCAGCTTATAGTCTTATTGATGTTGGTTTGGGATAA 2727 0.3839 MNFSVVQRKKVPFFPRQPSLLSCYCRRFCIAIHLFDKMPQRDFFVRDVHFELVADCIKLSLKKPNIVTATVVHCAALKIGALAYLPTSTSLLTLYSKAGSFTSSRVLFEDIQIRDVIVWNAIISASLENKCYRTAVEFFEKMIKVQTRFDSTTLLLMVSTLSHMKNFDQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDLNSFDSECLFEEMEYKDVVSWNSIMRGCLYNGDSENSLYYFRRMNFSEETADHVTLSCAISACASLGELAFGECIHGQGIKLGYKDSSHVSVANSLISLYSQCETVEVAETVFREIAYKDIVSWNTMMEGYASNENIHEVFDLMVEMQTTGSFQPDIVTLATILPLCADLMLSREGRAIHGYAIRRQMLSDHLPLRNSLIDMYSKCNLVVKAKILFRSTKERDLVSWNAMISGYSLNKYSEKAQNLFKELLCCSPNFSSSTVFAILSSCNSPNSLNFGKSVHSWQLKSGFLNHILLVNCLMQMYINCGDLTSGFSILQENSSITDIASWNTIIIGCVRGEHFQEALETFRLMRQGPSFNYDSITLVNVLSAIANMELLNQGKSLHSIALKSPLGSDTRVQNSLITMYDRCSDINSARKVFKFHSSSNLCTWNCMISALSHNKESREALDLFRRLQFKPNEFTIVSVLSTCTQIGILRHGKQVHGYMFRNGYQENSFISAALVDLYSNCGRLDNALKVFRHSQKSESAWNSMIAAYGNHGNGEKAIKLFHEMCESGTKATKSTFVSLLSACTHSGLVNQGLRYYECMLEKYGIKPEAEHQVYVVDMLGRSGRIDEAYEFTKGLKPNASSGVWGMLLSVCNYHGEIKLGKKVAEKLFEMEPQNVGYYISLSNMYVAAGSWKDATELRQSVYDQRLRKCAAYSLIDVGLG 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01017 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 221 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat 631 656 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat 529 555 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat 118 144 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat 426 452 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat 220 245 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat 398 423 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat family 320 365 IPR002885 -
Tsu05g01017 908 Pfam PPR repeat family 727 771 IPR002885 -
Tsu05g01017 908 Gene3D Tetratricopeptide repeat domain 374 478 IPR011990 GO:0005515
Tsu05g01017 908 Gene3D Tetratricopeptide repeat domain 174 274 IPR011990 GO:0005515
Tsu05g01017 908 Gene3D Tetratricopeptide repeat domain 282 373 IPR011990 GO:0005515
Tsu05g01017 908 SUPERFAMILY TPR-like 263 889 IPR011990 GO:0005515
Tsu05g01017 908 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 252 350 - -
Tsu05g01017 908 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 265 - -
Tsu05g01017 908 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 348 671 - -
Tsu05g01017 908 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 459 905 - -
Tsu05g01017 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 725 759 IPR002885 -
Tsu05g01017 908 Gene3D Tetratricopeptide repeat domain 20 173 IPR011990 GO:0005515
Tsu05g01017 908 Gene3D Tetratricopeptide repeat domain 544 679 IPR011990 GO:0005515
Tsu05g01017 908 Gene3D Tetratricopeptide repeat domain 726 900 IPR011990 GO:0005515
Tsu05g01017 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 556 IPR002885 -
Tsu05g01017 908 Pfam E motif 842 896 IPR046848 -
Tsu05g01017 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 628 658 IPR002885 -
Tsu05g01017 908 TIGRFAM PPR: pentatricopeptide repeat domain 630 656 IPR002885 -
Tsu05g01017 908 TIGRFAM PPR: pentatricopeptide repeat domain 728 758 IPR002885 -
Tsu05g01017 908 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Tsu05g01017 908 TIGRFAM PPR: pentatricopeptide repeat domain 529 554 IPR002885 -
Tsu05g01017 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01017 Tsu-Chr5 8794296 8797022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01017 253 906 Glycoside Hydrolase AT3G49170 29.254 8.34e-93 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01017 - - mtr:MTR_5g025580 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01017 05 8794296 8797022 Tsu05g01017 05 8794296 8797022 ECH