Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01011 ATGGCACCATCTAGGGTTTTCGGAGCATTTGCCGGCAGAGCACTCATGGCGGCTGCAGCTAAGAGCGCGACAAAGAAAGCTGCTGCTTCCGCCGAAGCTTCATCCAAAACTGCCGTGAAGAAAACGGTTAAGAGAACGGTCTCCGTCAAGAGTACCGGAGGTATACAGAAGGTTGTTCCGGTTACTTCTGAACTCGGAAGTTTCATCGGTTCACCTGAAGTTTCTAGAACTGAAGCTGTTAAGAAAGTTTGGGATTACATCAAGCTCCAGAATCTTCAgAATCCTGATAACAAGAAGGAGATCTTTTGTGATGACAAGCTGAAGACCATTTTCGATGGGAAAGATAAAGTTGTTTTTACTGAGATTGCCAGATTGTTGGCTAACCATTTCGTGAAAACAACCTGA 405 0.4494 MAPSRVFGAFAGRALMAAAAKSATKKAAASAEASSKTAVKKTVKRTVSVKSTGGIQKVVPVTSELGSFIGSPEVSRTEAVKKVWDYIKLQNLQNPDNKKEIFCDDKLKTIFDGKDKVVFTEIARLLANHFVKTT 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01011 134 PANTHER PROTEIN TRI1 4 133 - -
Tsu05g01011 134 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 4 133 - -
Tsu05g01011 134 Pfam SWIB/MDM2 domain 59 130 IPR003121 -
Tsu05g01011 134 Gene3D SWIB/MDM2 domain 48 134 IPR036885 -
Tsu05g01011 134 ProSiteProfiles SWIB/MDM2 domain profile. 54 132 IPR003121 -
Tsu05g01011 134 CDD SWIB-MDM2_like 59 130 - -
Tsu05g01011 134 SUPERFAMILY SWIB/MDM2 domain 49 132 IPR036885 -
Tsu05g01011 134 SMART swib_2 55 134 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01011 Tsu-Chr5 8754423 8757130 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Tsu05g01011 SWIB 7.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01011 - - gmx:100779127 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01011 05 8754423 8757130 Tsu05g01011 05 8754423 8757130 ECH