Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00996 ATGAATCCACTTGATCAAATGATTTCAGGTGGACCTCCAATAGGTTTCGATCCTTCAAAAATTTCAAGGATCGGAATACTTCCTCGTTATGCTAACGATGAGTGGAAGATGAAGTGGTTTGATGTCCCAGGGTTTAATATAGTTCACGCAATAAACGCGTGGgatgaagaagatggaaaaaCGGTTACACTTATAGCACCGAATATTCTCTCAATGGAGCATACAATGGAGAGATTGGAGCTTGTTCATGTTGAAACGGGGATTATAACAAGACAACCATTATCAGCGAGAAATATTGAGTTCGcagttttaaatagtaaatttatgGCGAAGAGAAGTAGGTTTGTTTATGCGGCAATTGAGAATCCAATGCCGAAGATTTCAGGAGTTGTTAAGATTGATGTGTTGAAAGGGGAGGAAGTTGGGTTTAGAATGTATGGGGAAGGTTGTTATGGAGGTGAACCGTTTTTTGTTGCGAAGGAAGGTGGCGGTGAAGAGGATGATGGTTATTTGGTGAGTTATGTGCATGATGAGCAGAAGGGAGAGTCGAGGTTTATAGTGATGGATGCTAAGTCACTGGAGTTGGAGTTAGTGGCCGAGGTGAAGTTGCCAAGGAGGGTGCCATATGGTTTTCATGGACTGTTTGTGAGTGATAGTGACATCAAGAAGTTGCCGATATCATAA 684 0.4006 MNPLDQMISGGPPIGFDPSKISRIGILPRYANDEWKMKWFDVPGFNIVHAINAWDEEDGKTVTLIAPNILSMEHTMERLELVHVETGIITRQPLSARNIEFAVLNSKFMAKRSRFVYAAIENPMPKISGVVKIDVLKGEEVGFRMYGEGCYGGEPFFVAKEGGGEEDDGYLVSYVHDEQKGESRFIVMDAKSLELELVAEVKLPRRVPYGFHGLFVSDSDIKKLPIS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00996 227 Pfam Retinal pigment epithelial membrane protein 6 217 IPR004294 GO:0016702
Tsu05g00996 227 PANTHER BETA-CAROTENE DIOXYGENASE 1 223 IPR004294 GO:0016702
Tsu05g00996 227 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00996 Tsu-Chr5 8638182 8638865 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00996 K09840 - gmx:100777875 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00996 05 8638182 8638865 Tsu05g00996 05 8638182 8638865 ECH