Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00995 ATGGTCCCTAAACCCATcataataacaaacaaacaaccaCCTATAACTCCTATCCCTCCATTTAACATCTCATCCATCAAAACCAAAGAAAACCCCCAAATCTCACAAACTCAAACACTAAAAACTACCACCACAAAAACTCTTCCTACACCCCCCACAACCACCACTACTACCACCACCCACAACCTCAAAAGCACAACCAAAAAACAAGAACCATCATTTCCTTCACTATTAATCAACACATTTGATGACATCATAAACAATTTCATAGACCCACCAATAAAACCATCAACAGATCCAAGACATGTTTTGTCCCAAAATTTCTCACCAGTACTAAATGAACTCCCTCCAACACAATGCGAAATCATTAACGGCACTTTACCGCCGTCACTTAATGGCGCTTACATAAGAAATGGCCCAAACCCACAATTCCTTCCGCGTGGACCTTACCACCTCTTTGATGGTGACGGCATGCTTCACGCCGTTACAATATCAAACGGAAAAGCCACACTATGTAGCCGTTATGTTAAAACCTACAAATACAAAACCGAAAATGAAGCCGGTTATCCACTTCTCCCAAATGTGTTTTCCGGTTTCAATTCGCTTATTGCTTCCGCGGCACGTGGCTCCATAAGTGCGGCACGTGTCATAACCGGTCAGTATAATCTCTCTAACGGCATTGGATTAGCAAACACCAGTttagctctgtttggtaaacgTCTTTTTGCTTTAGGAGAATCAGATCTTCCTTATGAAATTAAGTTAACGGAAAATGGTGATATTGAAACTATTGGCCGTTATGATTTTAACGGAAAACTATCCATGAGTATGACGGCACATCCAAAAATTGATCCTGAAACAGGTGAAACTTTTGCTTTCCGTTACGGTCCAATTCCACCTTTTCTAACCTATTTCCGTTTTGATTCTAACGGAGTTAAACACGACGACGTTCCTGTTTTCTCCATGACAAGACCATCATTTCTTCATGATTTCGCCATTACTAAAAAATATGCCATATTTGCCGATATACAGCTCGGAATGAATCCACTTGAAATGATTTCAGGTGGACCTCCGGTAGGTTCTGATCCTTCGAAAATTCCAAGGATCGGAATACTTCCTCGTTATGCTAACGATGAGTCGAAGATAAAGTGGTTTGATGTGCCAGGGTTTAATATAGTTCACGCGATAAACGCCTGGGACGAAGAAGATGGAAAAATTGTTACACTTATAGCACCAAATGTTCTCTCAGTGGAGCATACAATGGAGAGATTGGAGCTTGTTCATCCAATGATTGAGAGAGTGAAGATTAACATTGAAACAGGGATTATAACAAGACAACCATTATCAGCGAGAAATCTTGATTTCGCAGTTTTAAACCCTAAATTTCTAGCGAAGAAAAGTAGATATGTTTACGCGGCGATCGGTAATCCGATGCCAAAGATTTCAGGAGTTGTTAAGATTGATTTGTTGAAAGGGGAAGAAATTGGGTGTAGGATGTATGGAGAAGGTTGTTATGGAGGTGAACCGTTTTTCGTGGCGAATGAGGATGGTGTTGAAGAGGATGATGGTTATTTGGTGAGTTATGTGCATGATGAGCAGAAGGGAGAGTCGAGGTTTATAGTGATGGATGCAAAGTCGCCGGAGTTGAAAACAGTGGCGGAGGTGAAGTTGCCAAGGAGGGTGCCGTATGGTTTTCATGGACTGTTTGTGAGTGATAGTGACATCAAGAAGTTGTCTGTGTCATAA 1746 0.4038 MVPKPIIITNKQPPITPIPPFNISSIKTKENPQISQTQTLKTTTTKTLPTPPTTTTTTTTHNLKSTTKKQEPSFPSLLINTFDDIINNFIDPPIKPSTDPRHVLSQNFSPVLNELPPTQCEIINGTLPPSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAVTISNGKATLCSRYVKTYKYKTENEAGYPLLPNVFSGFNSLIASAARGSISAARVITGQYNLSNGIGLANTSLALFGKRLFALGESDLPYEIKLTENGDIETIGRYDFNGKLSMSMTAHPKIDPETGETFAFRYGPIPPFLTYFRFDSNGVKHDDVPVFSMTRPSFLHDFAITKKYAIFADIQLGMNPLEMISGGPPVGSDPSKIPRIGILPRYANDESKIKWFDVPGFNIVHAINAWDEEDGKIVTLIAPNVLSVEHTMERLELVHPMIERVKINIETGIITRQPLSARNLDFAVLNPKFLAKKSRYVYAAIGNPMPKISGVVKIDLLKGEEIGCRMYGEGCYGGEPFFVANEDGVEEDDGYLVSYVHDEQKGESRFIVMDAKSPELKTVAEVKLPRRVPYGFHGLFVSDSDIKKLSVS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00995 581 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 20 577 - -
Tsu05g00995 581 PANTHER BETA-CAROTENE DIOXYGENASE 20 577 IPR004294 GO:0016702
Tsu05g00995 581 MobiDBLite consensus disorder prediction 30 71 - -
Tsu05g00995 581 Pfam Retinal pigment epithelial membrane protein 108 571 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00995 Tsu-Chr5 8630541 8634009 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00995 K09840 - gmx:100777875 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00995 05 8630541 8634009 Tsu05g00995 05 8630541 8634009 ECH