Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00994 ATGAAAGCCATCGTTGTTCCACCACCGCCGGCACCACCCATCCACCGCAATGCTGACAAAACTTCAACCACCACTTGTCCTTCTTCCAACCACCAACTTCACCTTCGTCTACCTCTCTACAACCCCAACCCCAAAAACCTCTCTCTCCTTCCCAATTTTCCTCATCAACCTTCTCCACAACCCATTACTCCTCATGTGAACAAAAACAataaggagaagaagaagaaggagaataaGAGAAGAAAATGTGACACAACTTCACACATATTACCCTTAATGGATGCACTTCACTTTCCAATACCAATTGATATTTACACCTCTTTAGTCAAAGAATGCACTCTTTCCGGCAACCCAGAAACCGCTATTGAGTTGCATACACACATTATAAATAGTGGCATTGAACCTCCATTAAATTTGCTTAATCGGATTCTTATCATGTTTGTTTCGTGCGGTTTATTGGAGAATGCGCGCcatgtgtttgataaaatgtctgCTAGGAATTTTCATTCTTGGGCGATTTTGTTTGTTGCTTATTATGAAAATTCTGATTATGATAATGCAGTGGATGTATTTCTTGGTATGTTATGTCAATTGGGTGTGGTGGAGTTTCCGTTTCCTCCGTGGATTTGGTCTTGTTTTCTCACGGTTTGTGCTTGCACTGAGAATGTTCCTCTAGGAATGCAAGTTCATGGATGTTTGCTAAAGTTGGATGCTTGTGACCATGTGCTTGTCAGTAGCTCTTTGATCAGATTTTATGGGAGGTTCAAGTGTTCGGAAGATGCAAACGTTGTTTTTAATAAAGTGTCGCGGCATAACACGTTGACTTGGACTGCTAAAATTGTCAGTGGTTGTAAAGAACGGAATTTCTCTGAGGTTCTTGGTGATTTCAAGGAGATGGGAAGGGTAGGGATAAAGAAGGACAGTTTTACATTTTCTAGTGTTCTCAAAGCTTGTGGATGA 960 0.3937 MKAIVVPPPPAPPIHRNADKTSTTTCPSSNHQLHLRLPLYNPNPKNLSLLPNFPHQPSPQPITPHVNKNNKEKKKKENKRRKCDTTSHILPLMDALHFPIPIDIYTSLVKECTLSGNPETAIELHTHIINSGIEPPLNLLNRILIMFVSCGLLENARHVFDKMSARNFHSWAILFVAYYENSDYDNAVDVFLGMLCQLGVVEFPFPPWIWSCFLTVCACTENVPLGMQVHGCLLKLDACDHVLVSSSLIRFYGRFKCSEDANVVFNKVSRHNTLTWTAKIVSGCKERNFSEVLGDFKEMGRVGIKKDSFTFSSVLKACG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00994 319 MobiDBLite consensus disorder prediction 52 83 - -
Tsu05g00994 319 PANTHER PPR REPEAT PROTEIN 69 319 - -
Tsu05g00994 319 MobiDBLite consensus disorder prediction 1 15 - -
Tsu05g00994 319 Pfam PPR repeat 104 133 IPR002885 -
Tsu05g00994 319 Pfam PPR repeat 143 167 IPR002885 -
Tsu05g00994 319 Gene3D Tetratricopeptide repeat domain 215 319 IPR011990 GO:0005515
Tsu05g00994 319 Gene3D Tetratricopeptide repeat domain 75 214 IPR011990 GO:0005515
Tsu05g00994 319 PANTHER OS07G0578800 PROTEIN-RELATED 69 319 IPR045215 GO:0003723|GO:0009451
Tsu05g00994 319 MobiDBLite consensus disorder prediction 1 29 - -
Tsu05g00994 319 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00994 Tsu-Chr5 8621773 8622908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00994 99 319 Glycoside Hydrolase AT3G49170 28.634 3.76e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00994 - K08726 gmx:100778405 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00994 05 8621773 8622908 Tsu05g00994 05 8621773 8622908 ECH