Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00945 atgttCGTCAAGAAGCTCGTGGAGAAAGCTTCTATAAAGAAGATTGGTGGAAATTCATCAGCTGGATTAAAAGCTAGTGATGTAGATCCACGGCTGATATTTCATCATGGGGTACCATCAGGTGGTACCAAGTTTGCCTATGACAATATCCACAACATATTGGCCCTTTCTACCAATGATGGGAGGATTAAATTATTTGGTAAAGATAATACTCAAGTCCTACTTGAATCTAATAAGCCAGTGTATAGCAAGTTTTTACAGGTTACATTTTTCTGTCCTTTTCAAATGTCTCATAGGTTTGATATTGTTTGGGACATAGACAAGAAACTGTTGTGTGACTTGTACATTGTTAAAGAAGAAATCACTACTTTTGTAATCACTCAGCACAGCCTCTACATGTATATTGGAGTTTCTAGTGGTGATATTTCAGTTTTGAAGCTTGATCAAGATTTGCATGTCGAAAAAATGAATTACACCATACCCCTCTCAGCTTCTTTAGGGAACTCGACTGAAGTGTTCGATGATACTGTTGTGACACACATCTTGCCTCAACCAGCAGCTGAAACTAAGAGAGTTCTCATAATCTTTAGAAATGGTCAAATAATATTATGGGATATTCAAGAAAGCATATGCATTTCCAGAACTGGTGGAAGTGTGTCACAGCAACTACATAATGAAACAAAGAAAGTGTCTTGTGCATGTTGGGTGTGTCCTTTTGGAAGCAAAGTAGCTGTAGGGTACAGCAATGGAGAGCTTTACATTTGGAGCATCCCTTCTCTAACCACAGGAAATGTCTCAGCATTTGATTATAGCAGCAAAAACATTCCTATGTTCAAATTTAACTTAGGATATAAATCAGATAAAACTTGTATAATATCAGTAAAATGGATATATGCTGAAGGAAAGGCTAGTAGATTATATGTCTTGGGAGCTTCTCAATCAATGCAGGTAGTGTTGTTGAATGAACATACCGAGACTCGCACGATTAAGTTGGGACTTTATTTGTCTGAAATCTGTGTTGACATGGAGATTATATCAACCTCAAATGAgcaaaacaaacataaacaaaattctttgattttggttggaAAATCAGGCCATGTGTATCTGTATGATGATAGTATGATTGAAAGGTATCTATTGCAATGCCAATCTAAGTCTACTCCCTCACTGCCAAAGGAAGTTATTGTGAAGTTACCACTAGCTGATTCAAGCATTACCATAGCAAAATTCGTCTCTAACACTACCAATGAGTTTTATTCTCAAGATGAGTATTACAGTCAGATGCTAAAAAATTATCCACAGCTTATTTCAATTGAAACAAATCACAGAGATGGGATTAACCTGAGTTCTTCTGCCAACTTCTCTGGTTTTTCAAACATTAAAAACTTGTACATAACTGGACACCGTAATGGAGCCATTACATTTTGGGATGCATCATGTCCCTTTTTCATCCCAGTTTTGCAATTAAAGCAACAGAGTGAAAATGATCATTATTTAAGTGGTGTACCCTTGACAGAATTATATTTTGACATCAACACTCCTCTCCTTGTTTCTGGTGATCAGAGTGGAATGGTTCGTATATTCAGATTCAAACCTGAACCATACGCCTACAACAGCTTCATGTCTCTTACAGGAAGTACAAAGAAAGGGGTTGATCATGTTATCCAGAGTGTGAAACTTATGAAAACTATTGGTGCTGTAACTTGTATGAATATAGATCATAGCTCAGGGCATCTCGCTGTTGGTTCTGATCAAGGAAATGTTTCGGTTATTAACATGGATGGTCCATCGCTGTTGTATCAGAAACATATTGCAAGTGAAATTTCTACTGGTATCATCTCTCTGCAGTTCATAACATGCAGTTTATATGGTTTCTCGAAAAACATTTTAGCAGTTGGAACAAATGACTCGTCGGTTTTGGCACTGGATAATGAAACTGGAAATACACTTAGCACTGGAACTGTTCATCCTAAGAAGCCATCTAAAGCTTTATTTATgcaggttttggATGGACAATATGAACCAATTACAAAAGATAGCTTAGATTTGAGAGAAGGGAATCATATTGAGGATGcaacaacaaagaaaatgtACATTTTGTTGTGTTCTGAGAAGGCTTTATATATCTATTCATTTGAGCATGCTCTACAGGGAATCAAAAAGGTACTTTACAAAAAGAAGTTCTCTCCTTCTTCCTGTTGCTGGGCATCAACATTTTACAACGCCTCTGACATTGGTCTCTTTCTACTTTTCACCTCTGGAAAAGTAGAATTAAGGTGGTCTTTACCAGAACTATCTTTGATAGTGAAGACTTCAATTAGAGGTTTTACTTATATACCTCCGAAATTGAAATCATTTTCCGACAGCCAGATATGTTGCTCAGCCAGAGGAGACCTTGTTTTGGTGAATGGTGACCAGGAAATTTTTGTTGTCTCATTGTTGGTCCAGAGGAATATTTTCAGGCTTTTGGACTCTGTTGGCTGCATCTACAGGAAAGAAAGAATGCTATCACAAGAAGAACTTGTTCCTAACCCAATCATACctaaagaaaagaagaagGGCATATTCAACTCTGTTGTCAAAGATTTTACTGGCAGTAAGGAAAAGCACATGCCCCTCATGGAAAAAGAAGATCCCATAGAAAGTATCCAGGAACTCTCTGCAATATTTTCACATGCAAATTTTCCACCGCATGCCAACAATACTGTGGATGAAAATCAGCTAGAATCAAACTTAGATGAAGATCTGGAGAATCATAGAGAAATACGCAAAGAACAAAGCATATTAGGAGCTCTAAATAAGAAGAAATTGGCTGGCAAATTTCAGGCTCTAAAAGGAAAGGTGAAAGAGATGACAGGAAACAACCAGAAATCATCAGATAAGGAAGAGCAACAAGATGAGAAAGCTGGTGCAGTCAATCAAATTAAGAAGAAATATGGATTTCCATCTTCGTCCAATGAAACAAGTGTTGCTAAATTGACAGAAAGCAAGCTGCAGGAAAACATAAGGAAATTACAGGGTATTGAGCTACATACTACAGAGATACAAAATACAgcaaaatcatttttatcaagGGCAAAACAGGTGCTGAAAAATACTGAACAGGATAAACGAAGTTGA 3123 0.3599 MFVKKLVEKASIKKIGGNSSAGLKASDVDPRLIFHHGVPSGGTKFAYDNIHNILALSTNDGRIKLFGKDNTQVLLESNKPVYSKFLQVTFFCPFQMSHRFDIVWDIDKKLLCDLYIVKEEITTFVITQHSLYMYIGVSSGDISVLKLDQDLHVEKMNYTIPLSASLGNSTEVFDDTVVTHILPQPAAETKRVLIIFRNGQIILWDIQESICISRTGGSVSQQLHNETKKVSCACWVCPFGSKVAVGYSNGELYIWSIPSLTTGNVSAFDYSSKNIPMFKFNLGYKSDKTCIISVKWIYAEGKASRLYVLGASQSMQVVLLNEHTETRTIKLGLYLSEICVDMEIISTSNEQNKHKQNSLILVGKSGHVYLYDDSMIERYLLQCQSKSTPSLPKEVIVKLPLADSSITIAKFVSNTTNEFYSQDEYYSQMLKNYPQLISIETNHRDGINLSSSANFSGFSNIKNLYITGHRNGAITFWDASCPFFIPVLQLKQQSENDHYLSGVPLTELYFDINTPLLVSGDQSGMVRIFRFKPEPYAYNSFMSLTGSTKKGVDHVIQSVKLMKTIGAVTCMNIDHSSGHLAVGSDQGNVSVINMDGPSLLYQKHIASEISTGIISLQFITCSLYGFSKNILAVGTNDSSVLALDNETGNTLSTGTVHPKKPSKALFMQVLDGQYEPITKDSLDLREGNHIEDATTKKMYILLCSEKALYIYSFEHALQGIKKVLYKKKFSPSSCCWASTFYNASDIGLFLLFTSGKVELRWSLPELSLIVKTSIRGFTYIPPKLKSFSDSQICCSARGDLVLVNGDQEIFVVSLLVQRNIFRLLDSVGCIYRKERMLSQEELVPNPIIPKEKKKGIFNSVVKDFTGSKEKHMPLMEKEDPIESIQELSAIFSHANFPPHANNTVDENQLESNLDEDLENHREIRKEQSILGALNKKKLAGKFQALKGKVKEMTGNNQKSSDKEEQQDEKAGAVNQIKKKYGFPSSSNETSVAKLTESKLQENIRKLQGIELHTTEIQNTAKSFLSRAKQVLKNTEQDKRS 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00945 1040 Gene3D - 440 678 IPR015943 GO:0005515
Tsu05g00945 1040 MobiDBLite consensus disorder prediction 948 971 - -
Tsu05g00945 1040 MobiDBLite consensus disorder prediction 955 971 - -
Tsu05g00945 1040 SUPERFAMILY WD40 repeat-like 40 373 IPR036322 GO:0005515
Tsu05g00945 1040 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1039 - -
Tsu05g00945 1040 CDD R-SNARE_STXBP5_6 975 1032 - -
Tsu05g00945 1040 SUPERFAMILY WD40 repeat-like 190 649 IPR036322 GO:0005515
Tsu05g00945 1040 Coils Coil 906 926 - -
Tsu05g00945 1040 Gene3D - 31 392 IPR015943 GO:0005515
Tsu05g00945 1040 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1039 - -
Tsu05g00945 1040 SMART WD40_4 493 530 IPR001680 GO:0005515
Tsu05g00945 1040 SMART WD40_4 432 478 IPR001680 GO:0005515
Tsu05g00945 1040 SMART WD40_4 216 256 IPR001680 GO:0005515
Tsu05g00945 1040 SMART WD40_4 558 593 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00945 Tsu-Chr5 8202413 8213377 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00945 - - cam:101494027 1655.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00945 05 8202413 8213377 Tsu05g00945 05 8202413 8213377 ECH