Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00942 ATGACCGAAGCCGAAGAATCCTCTTCGTATCCTCCAATTGACCCAGTCAACTTCGATCTCATCATTATCGGAACCGGCCTTTCCGAATCCGTCATCGCCGCTGCCGCATCGGCCGTCGGTAAAACCATCCTCCACCTTGACCCTAACTCCTTCTACGGAAGCCATTTCGCTTCTCTCTCCCTCGAAGATCTCACCTCTTACCTCAATTCCCCTCCCAAATCCATCACCACCGAAAAATCAGCATCATCAAACGATTCCGATTACACCGTCGTAAACCTCATTCATCAACCTCTATTCTCCGATGCGGAGTTCATTTCGTGCGATTCTGTTGAGGAATCAACGTTCCTTCGTGAAAATTCGAGAAAATTCAATCTCGATTTGGGAGGACCTAGGGCATTATTCAGCGCAGACAAAACAATCGATCTGTTATTGAAATCAGGCGCTGCACAGTACTTAGAATTCAAAGGAATCGATGCGAGTCTCGTTTACAATGCGAATGAGGGTTTGATGAATGTGCCAGATTCTCGTGGAGCGATATTTAGAGATAAGAATCTTTCGCTTAAGGAGAAAAATCAATTGATGAAGTTTTTCAAGCTTGTTCAGCAACATTTGGGTGGTAACGAGGATGAGAAGATTTCAGAGGAAGATTTGGAGAGTTCTTTTGTTAGTTTTTTGGAGAAAATCGGGTTGCCGCCGAAGATAAAATCGATTCTATTGTATGCTATAGCCCTGGTAGATTTTGATCAAGAAAATGGCGAGGTTTGTAAAGACTTGCTTAAAACACAAGATGGAATAGACCGTTTAGCTCAATACAGCTCATCTGTTGGAAGGTTTCCCAATGCGCCGGGGGCTTTGCTTTATCCTATTTATGGTGAAGGAGAACTACCACAAGCCTTTTGTCGTCGTGCTGCTGTCAAAGGCTGCATTTATGTTCTCCGAATGCCAGTTATTTCTCTGCTTACAGATAAGGTGACTGGGTCGTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATACAGTCATCAGCTAATCCTGGACCCATCCTTCACGATTCCATCAACACTGTCTTCATCTCCTAATGATTCTTCCAGTGAAAATTTCCAGATGTTGAGTCAGAGAGATATTAAAGGAATGGTGGCTAGGGGAATATGCATCACAAGGAGTTCCATACAGGCAGATGTATCAAATTGCTCTGTGGTGTATCCTCCTAGATCCCTATATCCTGACCAGGTTACATCAGTCAGAGCTCTTCAGATAGGACCAAATCTCGCTGTATGTCCTGCGGGCACctttgttttatatttttccacTTTGTGCAATGATGCCGATGAAGGAAAGAAGTTACTAAAAGCATCAATGAATGCTCTTCTTACGCTGTCTGCTGTTCAAAGTGACGGTGAAGATAAAAAACCTGTTGTGCTTTGGAGTGCATTTTATATTCAAAAGTTAACTATGACTAAATTTGAAGCTATCAGTTCCACTCCTACACCAGATGGAAATCTAAACTACAATGACCTTTTAGATGCAACTGAGAAGGTATGTCTTTATCATTCTTCTGTTGACTTTGCACTGTGTATAACTAATTGTTACTGTCTTTTAAGCTAG 1608 0.4192 MTEAEESSSYPPIDPVNFDLIIIGTGLSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLEDLTSYLNSPPKSITTEKSASSNDSDYTVVNLIHQPLFSDAEFISCDSVEESTFLRENSRKFNLDLGGPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNANEGLMNVPDSRGAIFRDKNLSLKEKNQLMKFFKLVQQHLGGNEDEKISEEDLESSFVSFLEKIGLPPKIKSILLYAIALVDFDQENGEVCKDLLKTQDGIDRLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVISLLTDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSTLSSSPNDSSSENFQMLSQRDIKGMVARGICITRSSIQADVSNCSVVYPPRSLYPDQVTSVRALQIGPNLAVCPAGTFVLYFSTLCNDADEGKKLLKASMNALLTLSAVQSDGEDKKPVVLWSAFYIQKLTMTKFEAISSTPTPDGNLNYNDLLDATEKVCLYHSSVDFALCITNCYCLLS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00942 535 Gene3D - 15 514 IPR036188 -
Tsu05g00942 535 SUPERFAMILY FAD/NAD(P)-binding domain 16 350 IPR036188 -
Tsu05g00942 535 SUPERFAMILY FAD-linked reductases, C-terminal domain 377 482 - -
Tsu05g00942 535 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 97 484 - -
Tsu05g00942 535 Pfam GDP dissociation inhibitor 17 95 IPR018203 GO:0005092|GO:0007264
Tsu05g00942 535 Pfam GDP dissociation inhibitor 119 440 IPR018203 GO:0005092|GO:0007264
Tsu05g00942 535 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Tsu05g00942 535 PRINTS Rab GDI/REP protein family signature 139 155 IPR018203 GO:0005092|GO:0007264
Tsu05g00942 535 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Tsu05g00942 535 PRINTS Rab GDI/REP protein family signature 291 312 IPR018203 GO:0005092|GO:0007264
Tsu05g00942 535 PRINTS Rab GDI/REP protein family signature 189 204 IPR018203 GO:0005092|GO:0007264
Tsu05g00942 535 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 14 514 - -
Tsu05g00942 535 PIRSF Rab_ger_ger_transf_A_euk 76 521 IPR001738 GO:0005968|GO:0006886|GO:0018344
Tsu05g00942 535 PIRSF Rab_ger_ger_transf_A_euk 1 114 IPR001738 GO:0005968|GO:0006886|GO:0018344
Tsu05g00942 535 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 172 284 - -
Tsu05g00942 535 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 514 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00942 Tsu-Chr5 8178589 8184560 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00942 K23460 - gmx:100795946 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00942 05 8178589 8184560 Tsu05g00942 05 8178589 8184560 ECH