Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00941 ATGAATTCCTCTGCCACTTGCACTCGATGTGGCCTCCAAAATGAATCATTCCTTCACTGCATCCAGGATTATGAGTTAAGATCAAACAACAAATTCAGAAGAGATGATCAGTGTCTTATTGGAATGATTGGGCGTGCATTTTCCGAAGCAAATAAATTGCATACTGTGGCTGAGCTTCAACCATTTTTGTTATCATTAGCAAAGAAATCAAAACCCATAACACTAAAACAATGCAATCAAATCCATGCGAAACTAATAATCACCCAATGCATTTCACAAACCCATTTAGTCAACACCCTTTTGGGTTTCTACTCAAAATCTTCAAACTTTCACCATGCCCATCAACTGTTCGAAAAAATGCCTTACAGAAATATTGTCACTTGGACAACATTAATTTCATCGCATCTCAAATATGGGTCGGTACCAAAAGCCTTCGAGATGTTCAATTACATGCGTGCATTTGATGAGAGTCCTAACGAGTACACTTTCTCTGTTTTGCTTCGAGCTTGTTCCAACCGTGAATTTTGGAATGCGGGTTTGCAGATTCATGGTTTGGTTGTTCGGTGTGGCCTTGAAAGAGACAAATTTTCTGGGAGCTCTCTTGTGTATATGTACTTCAAAGGTGGCAATAACATAAGGGATGCGTGGCGTGTTTTTGATGAGTTGCTGGAGAGAGATGTTGTTGCTTGGAATGTTATGATTTCTGGGTTTGCTCTAGTTGGTGACTTTTGTATGGTGCAAAGGTTGTTTTCTGAAATGTCGGAAGTACAAGGGTTGAAACCTGATAATAGTACCTTTGTTAGTCTACTCAAGTGTTGTTCTTTGTTGCAAGAGTTAAAGCAAATTCATGGGCTTTTATACAAGTTTGGTGCTGAAGTTGATGTTGTAGTTGAGAGTGCTATGGTTGACTTGTATGCTAAATGTGGGGATGTGAGTTCTTGCAGGATGATTTTTGATTCCATGGAGGAGAAGGATAATTTTGTTTGGAGTTCAATGATTTCAGGATATACCATGAATAATAGAGGAGAGGAAGCTGTGCATTTTTTCAAAGATATGTGTAGACAAAGGGTGAAACTTGATCAGCATGTGTTATCTAGTACTTTGAAAGCTTGTGTTGAAATAGAGGACTTGAACACTGGTGTTCAAGTGCATGGTCTAATGATAAAAAACGGGCATCGGAATGATTGTTTTGTAGCAAGTGTGTTGTTGACTCTCTATGCTAGTTTTGGTGAGCTAAGGGATGTAGAAAAGTTGTTTAGGGGGATTGGCAATAAAGATATTGTAGCATGGAACTCTATGATCTTGGCTCAAGCTCGGCCAGGTCGAGGATCTGGTCGTTCTATGGAACTATTGCAAGAGCTTCGTCGAACAaccattttgaaaattgaaggTGCCACTCTGGTTGCTGTTTTGAAGTCTTGTGAGAATGAATCAGATTTGCCTGCAGGTAGACAACTTCATTCACTTATAGTGAAATCAAGTGTGTATCATCATACTTTGGTTGGCAATGCATTAGTCCACATGTACTCTGAGTGTAGACAAATTAATGATGCATTTAAAGTTTTTGTTGACATTGTCTATAAAGATGATAGTTCTTGGAGTTCTATTATTGGAACTTACAAACAAAATGGAATGGAATCCAAAGCTTTAGCGCTATGCAAAGAGATGTTAGCTGAAGGAATAAATTTTACAAGTTATAGCCTTCCGCTGTGTATTTCAGCTTGCTCACAACTTTCAGCTATATGCGAGGGTAAACAACTACATGTTGTTGCCATCAAGTCCGGTTACAACTGCGATGTCTACGTTGGGAGTTCCATTATAGATATGTACGCTAAATGTGGGAACATGAAAGAGTCGGAGAAAGTTTTCGATGAACAATTAGAGCCAAATGAAGTTATTTTTAATGCCATGATCTGTGGATATGCACATCATGGAAAAGCACAAGAAGCCATAGTAGTATTCAGTAAGTTAGAGAAGAATGGTGTAGCTCCCAATCATGTGACTTTCTTAGCTTTGATGTCAGCATGTAGCCATACAGGGTATGTAGAAGAAACTTTGCATTTGATTAAATTGATGCTTGACAAATACAAGATTAAGCCAAAATCAGAGCATTATTCGTGCCTGGTTGATGCGTATGGTCGGGCGGGAAGGCTGGAGGAAGCTTACCAGATAGTGCAAAAAGATGGAAGTGAATCTGCATGGAGATCATTACTTGGCGCTTGTAGAAATCATAATAACacaaaaattggagaaaaaacTGCAATAAAGATGATAGAATTGAATCCTAGTGATCATGCCCCGTATATTCTTCTTTCAAATATCTACACTGTAGAGGGAAAATGGGAAGAAGCTGTTAAATGTAGGGAGAAAATGGCGAAGATTAGAGTGAAGAGAGATCCAGCAAGTAGTTGGTTAATTTGA 2421 0.3825 MNSSATCTRCGLQNESFLHCIQDYELRSNNKFRRDDQCLIGMIGRAFSEANKLHTVAELQPFLLSLAKKSKPITLKQCNQIHAKLIITQCISQTHLVNTLLGFYSKSSNFHHAHQLFEKMPYRNIVTWTTLISSHLKYGSVPKAFEMFNYMRAFDESPNEYTFSVLLRACSNREFWNAGLQIHGLVVRCGLERDKFSGSSLVYMYFKGGNNIRDAWRVFDELLERDVVAWNVMISGFALVGDFCMVQRLFSEMSEVQGLKPDNSTFVSLLKCCSLLQELKQIHGLLYKFGAEVDVVVESAMVDLYAKCGDVSSCRMIFDSMEEKDNFVWSSMISGYTMNNRGEEAVHFFKDMCRQRVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHRNDCFVASVLLTLYASFGELRDVEKLFRGIGNKDIVAWNSMILAQARPGRGSGRSMELLQELRRTTILKIEGATLVAVLKSCENESDLPAGRQLHSLIVKSSVYHHTLVGNALVHMYSECRQINDAFKVFVDIVYKDDSSWSSIIGTYKQNGMESKALALCKEMLAEGINFTSYSLPLCISACSQLSAICEGKQLHVVAIKSGYNCDVYVGSSIIDMYAKCGNMKESEKVFDEQLEPNEVIFNAMICGYAHHGKAQEAIVVFSKLEKNGVAPNHVTFLALMSACSHTGYVEETLHLIKLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQIVQKDGSESAWRSLLGACRNHNNTKIGEKTAIKMIELNPSDHAPYILLSNIYTVEGKWEEAVKCREKMAKIRVKRDPASSWLI 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00941 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Tsu05g00941 806 Pfam E motif 744 805 IPR046848 -
Tsu05g00941 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Tsu05g00941 806 Gene3D Tetratricopeptide repeat domain 176 255 IPR011990 GO:0005515
Tsu05g00941 806 Gene3D Tetratricopeptide repeat domain 74 175 IPR011990 GO:0005515
Tsu05g00941 806 Gene3D Tetratricopeptide repeat domain 444 585 IPR011990 GO:0005515
Tsu05g00941 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 261 IPR002885 -
Tsu05g00941 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Tsu05g00941 806 PANTHER - 212 561 - -
Tsu05g00941 806 PANTHER - 447 805 - -
Tsu05g00941 806 Pfam PPR repeat 604 625 IPR002885 -
Tsu05g00941 806 Pfam PPR repeat 328 355 IPR002885 -
Tsu05g00941 806 Pfam PPR repeat 299 324 IPR002885 -
Tsu05g00941 806 Pfam PPR repeat 704 726 IPR002885 -
Tsu05g00941 806 Pfam PPR repeat 532 561 IPR002885 -
Tsu05g00941 806 SUPERFAMILY TPR-like 590 794 IPR011990 GO:0005515
Tsu05g00941 806 PANTHER - 447 805 - -
Tsu05g00941 806 Pfam PPR repeat family 123 171 IPR002885 -
Tsu05g00941 806 Pfam PPR repeat family 629 677 IPR002885 -
Tsu05g00941 806 Pfam PPR repeat family 225 273 IPR002885 -
Tsu05g00941 806 Gene3D Tetratricopeptide repeat domain 257 381 IPR011990 GO:0005515
Tsu05g00941 806 Gene3D Tetratricopeptide repeat domain 626 805 IPR011990 GO:0005515
Tsu05g00941 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Tsu05g00941 806 PANTHER - 77 458 - -
Tsu05g00941 806 PANTHER - 212 561 - -
Tsu05g00941 806 PANTHER - 77 458 - -
Tsu05g00941 806 TIGRFAM PPR: pentatricopeptide repeat domain 532 562 IPR002885 -
Tsu05g00941 806 TIGRFAM PPR: pentatricopeptide repeat domain 328 360 IPR002885 -
Tsu05g00941 806 TIGRFAM PPR: pentatricopeptide repeat domain 632 665 IPR002885 -
Tsu05g00941 806 TIGRFAM PPR: pentatricopeptide repeat domain 705 726 IPR002885 -
Tsu05g00941 806 TIGRFAM PPR: pentatricopeptide repeat domain 126 160 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00941 Tsu-Chr5 8169715 8172996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00941 131 805 Glycoside Hydrolase AT3G49170 29.565 3.90e-102 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00941 - - gmx:102667531 1210.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00941 05 8169715 8172996 Tsu05g00941 05 8169715 8172996 ECH