Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00866 ATGGCTTCCACATCCACCAATACTTCTCTATCCCTTAAACAACCCATTCACCTCTCTTCCCTTCAAAATCCTAAATTTCTCCACCCTCACTCCTTATTCTACCACCCCACCaaccattttcctaaaaattCATCTCTTTCTACATCTCTTAGGTCACCAATATGTGCTACTTCTTCTCAACTCATGGCAGCAAAAATTGAACCTGGTGTTCCCACCATTGTCAACGTTGATTTGGGTAATCGGAGTTATCCTATTTACATCGGATCCGGGTTGCTCAATAAACCAGAGCTTCTTCAAAGGCATGTCCATGGAAAGAAGGTCCTTATTGTCACTAACACTACGGTTGCACCTTTGTATCTAGACAAGGTTGTTGATGCTTTAACAAGTGGGAACCCAAATGTTTCTGTTGAGAGTGTAATTTTACCAGATGGTGAGCAGTACAAGGACATGGATACTCTTATGAAAGTGTTTGACAAGGCCATCGAGTCACGGTTGGACCGGCGGTGTACTTTTGTTGCCCTTGGAGGTGGTGTGATCGGTGACATGTGTGGCTTTGCTGCCGCGTCATTCCTACGTGGTGTTAATTTTATTCAGATTCCAACCACTGTTATGGCACAGGTTGATTCTTCGGTTGGTGGCAAAACTGGGATAAACCATCCTCTTGGAAAGAACCTGATCGGTGCTTTTTACCAACCTCAGTGTGTGCTTATAGACACAGACACATTAGATACATTACCAGAAAGGGAATTGGCATCAGGGTTTGCAGAGGTTATTAAGTACGGGCTCATTAGGGATACAGAATTTTTTGAGTGGCAAGAGAAAAATATGCAAGCATTAATGGCTAGAGATCCTAATGCATTGGCATATGCTATAAAGCGATCGTGTGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAGAGAAGGTGGAGTCAGGGCAACATTGAACTTGGGTCATACATTTGGTCATGCAATAGAAACTAGCGTTGGTTATGGCCACTGGCTTCATGGAGAGGCTGTTGCAGTTGGCACgGTAATGGCTGTTGACATGTCATATCGCGTAGGTTGGATTGATGATTCTATTGTAAAGCGAGTTAGTGACATTTTGAAACAGGCTAAGTTACCTATTGTGCCTCCTGAAATGATGACCGTAGACATGTTTAAATCTGTCATGGCGGTTGATAAGAAGGTAGCAGATGGACTGCTGAGACTTATCCTTCTAAAGGGTCCTCTAGGAAATTGCGTTTTCACGGGGGATTATGACAGGAAGGCTCTAGATGATACGCTTCGTGCATTCTGTAAATCTTGA 1308 0.4304 MASTSTNTSLSLKQPIHLSSLQNPKFLHPHSLFYHPTNHFPKNSSLSTSLRSPICATSSQLMAAKIEPGVPTIVNVDLGNRSYPIYIGSGLLNKPELLQRHVHGKKVLIVTNTTVAPLYLDKVVDALTSGNPNVSVESVILPDGEQYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLDTLPERELASGFAEVIKYGLIRDTEFFEWQEKNMQALMARDPNALAYAIKRSCENKAEVVSLDEREGGVRATLNLGHTFGHAIETSVGYGHWLHGEAVAVGTVMAVDMSYRVGWIDDSIVKRVSDILKQAKLPIVPPEMMTVDMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLRAFCKS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00866 435 Pfam 3-dehydroquinate synthase 139 397 IPR030960 -
Tsu05g00866 435 SUPERFAMILY Dehydroquinate synthase-like 74 428 - -
Tsu05g00866 435 PANTHER 3-DEHYDROQUINATE SYNTHASE 70 431 - -
Tsu05g00866 435 CDD DHQS 82 429 - -
Tsu05g00866 435 Gene3D - 245 435 - -
Tsu05g00866 435 Hamap 3-dehydroquinate synthase [aroB]. 71 433 IPR016037 GO:0003856|GO:0005737|GO:0009073
Tsu05g00866 435 TIGRFAM aroB: 3-dehydroquinate synthase 83 423 IPR016037 GO:0003856|GO:0005737|GO:0009073
Tsu05g00866 435 Gene3D - 61 244 - -
Tsu05g00866 435 PANTHER 3-DEHYDROQUINATE SYNTHASE, CHLOROPLASTIC 70 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00866 Tsu-Chr5 7484762 7488557 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00866 K01735 - gmx:100806628 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00866 05 7484762 7488557 Tsu05g00866 05 7484762 7488557 ECH