Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00796 atgaaatCTCTcaattttcttctattttcacTTTCACTCATCATAGTTTCAACATTACTAAAATTTTCAGAATCAAAAACCCATTGGGAAGACATAAAAGCTCTAaaacaattcaaacaaaacataaacCCTGATTCAGTGAAACCAGGTTCATGCGTGAACACATGGAACTTCACCTTCGACCCATGCGAAAATCTCTTTAGCGACAAATTTACCTGCGGATTCAGATGTGATATCACCGTGTCAAAACTCAGTCGAGTCACCGAACTCACTCTCGACCAAGCTGGTTACACCGGTTCACTCACTTCCATCAATCTTCCTTACCTCGAAATTCTCGAACTTTCAAACAACTACTTCACTGGTTCAATTCCCGATTCTCTTTCAAATTTAACTCGTCTGAGTCGACTCAGTCTATCATCTAACTCGTTCACCGGAGAAATACCTTCTTCCATTGGATCTTCACTTTCAAATCTCCAAGAGCTTTATCTCGATAACAACAATCTTCAAGGAACGATTCCTTCAACTTTCAATAATCTTAAAAGCTTAACAAGACTCGAACTTCAAGAAAACAACTTCACCGGAAAATTTCCCGATTTGGGTTCTCTGCAAAATCTCTACTACATAGATCTCAGTAATAATAAATTCTCCGGTGACCCATTTGAATTTCCGGTGACATTACCAGTTTCTTTAGTTCAGATTTCAATGAGGAACAATAACTTAACCGGTTTAAGTTCTGAAAGTTTCaagaatttgaattatttacAGGTTATTGATTTCAgctcaaataaaatcaatggcaATGTTCCTTCTATATTCTTTCAGCTTCCATCATTGCAACAGTTAACGCTTTCATTCAACGAGTTTTCATCAATTGAAGCACCTTCATTTGGAACAGAATCActtcaaaacgagcttatagcagTTGATTTAAGCAATAATCAGCTTCAAGTTCTGCATCATGTCTGA 966 0.3354 MKSLNFLLFSLSLIIVSTLLKFSESKTHWEDIKALKQFKQNINPDSVKPGSCVNTWNFTFDPCENLFSDKFTCGFRCDITVSKLSRVTELTLDQAGYTGSLTSINLPYLEILELSNNYFTGSIPDSLSNLTRLSRLSLSSNSFTGEIPSSIGSSLSNLQELYLDNNNLQGTIPSTFNNLKSLTRLELQENNFTGKFPDLGSLQNLYYIDLSNNKFSGDPFEFPVTLPVSLVQISMRNNNLTGLSSESFKNLNYLQVIDFSSNKINGNVPSIFFQLPSLQQLTLSFNEFSSIEAPSFGTESLQNELIAVDLSNNQLQVLHHV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00796 321 Gene3D Ribonuclease Inhibitor 155 224 IPR032675 -
Tsu05g00796 321 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 7 316 - -
Tsu05g00796 321 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 7 316 - -
Tsu05g00796 321 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Tsu05g00796 321 SUPERFAMILY L domain-like 51 318 - -
Tsu05g00796 321 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Tsu05g00796 321 Pfam Leucine rich repeat 230 287 IPR001611 GO:0005515
Tsu05g00796 321 SMART LRR_typ_2 155 178 IPR003591 -
Tsu05g00796 321 SMART LRR_typ_2 179 202 IPR003591 -
Tsu05g00796 321 SMART LRR_typ_2 275 298 IPR003591 -
Tsu05g00796 321 SMART LRR_typ_2 130 154 IPR003591 -
Tsu05g00796 321 SMART LRR_typ_2 228 250 IPR003591 -
Tsu05g00796 321 SMART LRR_typ_2 106 129 IPR003591 -
Tsu05g00796 321 Gene3D Ribonuclease Inhibitor 225 320 IPR032675 -
Tsu05g00796 321 Gene3D Ribonuclease Inhibitor 30 154 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00796 Tsu-Chr5 6739797 6741967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00796 28 316 Receptor kinase-like Gene Family AT3G05660 33.660 7.58e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00796 - - gmx:100811366 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00796 05 6739797 6741967 Tsu05g00796 05 6739797 6741967 ECH