Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00756 ATGGCTTATCAAATGATAAGCTTCCGCAGTCAAACTTGTttgttaatatttctttttggttttgtttgctTAATCTCTTTTCCAGTTGAAGCAGCAATAAAGAAATACCAATTTGATGTTCAAATGAAGAATGTGAGTAGACTATGCCATGCAAAACCAATAGTAACAGTAAATGGGAGATTTCCAGGACCAACAATTTATGTTAGAGAAGGAGATAGAGTACAAATAAATGTCACCAATCATGTAAAATACAACATATCAATTCATTGgCATGGACTTAAACAGTATCGTAATGGTTGGGCTGATGGGCCAGCTTATATAACTCAATGTCCAATCCAAACTGGTGGAAGCTACACTTATGACTTCAATGTGACTGGACAAAGAGGAACTTTATGGTGGCATGCACATATTCTTTGGTTAAGGGCTACTGTTTATGGTGCCATTGTTATCTTGCCTAAACAAGGGACCCCTTTTCCTTTTCCACAGCCAGCTAGAGAATTTGAAATTGTGTTAGgAGAATGGTGGCACAAGGATGTTGAAGAGATAGAAAATCAAGGGAATCAAATGGGTTTGCCACCAAATATGTCGGATGCACATACTATCAACGGAAAGCCGGGACCACTTTTTCCTTGTTCAGAGAAACATACATATGCAATGGAGGTTGAGAAGGGAAAGACATATCTATTAAGAATCATCAATGCAGCTCTCAATGATGAACTATTCTTTTCTATAGCTGGTCACAACATGACAGTAGTTGAAGTTGATGCAGTTTACACAAAACCATTCATAACACAATCAATTCTAATTGGTCCTGGTCAAACCACAAATGTTTTAGTCAAAGCAAACAAAATAGCAAGTAGATATTTCATTGCTACAAGAACTTTCATGGATGCACCACTCTCAGTTGATAACAAAACTGCAACAGCTATATTTCAATATAAAGGAGTTTCAAACACTATAATCCCTTCATTTCCTACAACACTTCCTAATGCAAATGACACAAACTTTGCTTTAAATTATGGCAAGAAAATAAGAAGCTTAAATTCTGCTAAATATCCTGCTAATGTTCCTCTTAAAGTTGATAGAAACCTTTTTTACACTATTGGTTTAGGCATGAATTCTTGTCCTACATGCATCAACGGAACACGTTTAGTTGCATCACTTAACAATGTTACTTTTGTGATGCCGAAAACCGCGCTTCTTCAAGCTCATTACTTTGATATCAAGGGTGTTTTCAGAACTGATTTTCCTGATAAGCCTTTAGCTCCTTTTAACTATACCGGTGCACCTTTAACGGCGAATCTTGGTACTGTAACGGGGACGAGAGTTAGTAAGATTGCGTTTAATTCTACTGTTGAGCTGGTTTTGCAGGATACTAATCTTCTTACTGTTGAATCACATCCATTTCATCTTCATGGTTataacttttttgttgttggaacTGGTATTGGTAATTTTAATCCTGCTAAAGATCCTGCTAAATATAACTTGGTTGATCCTATGGAGAGGAACACCGTCGGTGTTCCTACCGGTGGTTGGACCGCAATTCGATTCAGGGCTGATAATCCAGGTGTTTGGTTCATGCATTGTCATTTGGAATTGCACACTGGTTGGGGGTTGAAAACTGCTTTTGTTGTGGAAGATGGGCCAGGACAAGATCAATCTGTTCTGCCACCACCTAAAGACCTTCCAAAATGTTAG 1701 0.3692 MAYQMISFRSQTCLLIFLFGFVCLISFPVEAAIKKYQFDVQMKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVQINVTNHVKYNISIHWHGLKQYRNGWADGPAYITQCPIQTGGSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVILPKQGTPFPFPQPAREFEIVLGEWWHKDVEEIENQGNQMGLPPNMSDAHTINGKPGPLFPCSEKHTYAMEVEKGKTYLLRIINAALNDELFFSIAGHNMTVVEVDAVYTKPFITQSILIGPGQTTNVLVKANKIASRYFIATRTFMDAPLSVDNKTATAIFQYKGVSNTIIPSFPTTLPNANDTNFALNYGKKIRSLNSAKYPANVPLKVDRNLFYTIGLGMNSCPTCINGTRLVASLNNVTFVMPKTALLQAHYFDIKGVFRTDFPDKPLAPFNYTGAPLTANLGTVTGTRVSKIAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFNPAKDPAKYNLVDPMERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFVVEDGPGQDQSVLPPPKDLPKC 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00756 566 CDD CuRO_1_LCC_plant 36 152 IPR034288 GO:0005507
Tsu05g00756 566 ProSitePatterns Multicopper oxidases signature 2. 529 540 IPR002355 GO:0005507
Tsu05g00756 566 SUPERFAMILY Cupredoxins 357 566 IPR008972 -
Tsu05g00756 566 CDD CuRO_2_LCC_plant 169 313 IPR034285 -
Tsu05g00756 566 Pfam Multicopper oxidase 437 548 IPR011706 GO:0005507|GO:0016491
Tsu05g00756 566 Pfam Multicopper oxidase 40 154 IPR011707 GO:0005507
Tsu05g00756 566 TIGRFAM laccase: laccase 31 566 IPR017761 GO:0046274|GO:0048046|GO:0052716
Tsu05g00756 566 Pfam Multicopper oxidase 169 315 IPR001117 -
Tsu05g00756 566 CDD CuRO_3_LCC_plant 411 549 IPR034289 GO:0005507
Tsu05g00756 566 SUPERFAMILY Cupredoxins 160 346 IPR008972 -
Tsu05g00756 566 ProSitePatterns Multicopper oxidases signature 1. 524 544 IPR033138 -
Tsu05g00756 566 Gene3D - 164 350 IPR008972 -
Tsu05g00756 566 PANTHER MULTI-COPPER OXIDASE 13 566 IPR045087 -
Tsu05g00756 566 PANTHER LACCASE 13 566 - -
Tsu05g00756 566 Gene3D - 24 152 IPR008972 -
Tsu05g00756 566 SUPERFAMILY Cupredoxins 28 178 IPR008972 -
Tsu05g00756 566 Gene3D - 372 566 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00756 Tsu-Chr5 6370596 6373828 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00756 K05909 - gmx:100820452 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00756 05 6370596 6373828 Tsu05g00756 05 6370596 6373828 ECH