Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00752 ATGTCCGCCGCTAAATTAACCTCATGCGCCGCCATAGCAGCCGCCGCAGCGGCTTCAATGTCAACTCGCTCCGATCGTGCTTACTCCGAATCTTACTTTCGTTTcccttttttctcttcttcaccTTCCAATTCATCTTCTCCGACGGACCAATCATCTAACAACAAGTCAGAATCTCCATCATCTGAAGAACCTAACAAGTCTGGTTTTGATCCTGAATCGTTAGAAAGAGCTGCTAAAGCTACTCGAGAAATCAATAGTTCTCGTCACGCTAAAaagGTGTTTGCGTTAATGAATAAACAGGAACAAACTCGTCTTGCTGAGATAGATGctgaaaaaatttattatgaacTTATTCAGACTCAAAAAGATATTGACAGGCTGCGTAAAATGGCTGAAGACCAACGCAATCTAATACAAGAACAGAACCAGAGGCAGGCTCAGGTGTTACGGATGGAAGATGATCTGGAAAGGAAAAGAATGCAGAAACATCACGAAGATCAAAGGCGACATAATGCTGAGTTGATCATGATGCAAGAGAAATCTTCTGAAAGAAAGGAGCTGGCAAGACAGGCTTCCGAAGAACAGATTCAATATCAGAAGCGTCAGACTGAAAGAGAGAGAGCtgaaatagaaagagaaaccaTTAGAGTTAAGAAAATGGCGGAGGCTGAAGCCAATGTCCTTGAAGCAAAATTGACTGAGGATCATAACAGGAGAATGCTTATAGAGCGAATGCACGGGGAAAGGGATAAATGGGTTGCTGCAATTCATGCTACTTTTAGTCATATTGAAGGTGGTCTAAGGGTCTTATTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCATTAGCTGCAGGAGTATATACAACAAGAGAAGGTGCAAAAGTTACATGGGGCTATATTAATCGGATTTTGGGGCAGCCATCATTGATCCGGGAATCATCCATGGCAAAGTTTCCAGGATCAAGGATCATGTCTCAAgccaaaaataaagttttaaattATAGTACCTTGGCCAAGGCAGAAAAGCCTGCTGGGAGTCAAAATGGGCTTGGAAATGTAATCCTGCATCCATCATTGCAGAGAAGAATAGCGCATCTAGCACGGGCAACATCAAATACCAAGGCCCATCAGGCACCATTTCGGAACATGCTTTTTTATGGGCCTCCTGGAACTGGTAAAACCATGGTTGCAAGGGAAATAGCTAGAAAATCGGGTTTGGATTATGCAATGATGACTGGAGGAGATGTTGCACCTCTGGGCCCACAAGCTGttaccaaaattcatgagaTATTCGATTGGGCCAAGAAATCTAAAAGAGGCCTATTGCTATTTATTGATGAGGCAGATGCTTTCCTTTGCGAACGTAACAGCATACACATGAGTGAAGCCCAACGAAGTGCCCTAAATGCACTGCTTTTCAGAACTGGTGATCAGTCTAGAGACATAGTGCTTGTGCTTGCCACAAACAGACCAGGAGATCTAGATAGTGCAATTACTGATCGGATTGATGAAGTAATTGAATTCCCACTTCCAGGAGAGGAGGAACGTCTTAAGTTATTGAACCTCTATTTGAACAAGTATCTACGTGATGAAAGTAATAGTTCCAAGGGAGGGTTATTTCTTAAGAAGCAACCTCAGAAAATTGTCATAAAAGATTTATCCGAAGATGTGCTGAAAGAGGCTGCAAAGAAAACAGAGGGATTTTCTGGCCGTGAGATAGCCAAACTAATGGCCAGCGTTCAAGCGGCTGTCTATGGACGCCCTGACTGCTCCTTGGATTCTCAGTTGTTTAAACAAATTGTAGATTACAAGGTGGTGGAACATCATCAGAGATTAAAACTGGCAGCTGAAGGCGGCCTCCCTGCGTAA 1887 0.4139 MSAAKLTSCAAIAAAAAASMSTRSDRAYSESYFRFPFFSSSPSNSSSPTDQSSNNKSESPSSEEPNKSGFDPESLERAAKATREINSSRHAKKVFALMNKQEQTRLAEIDAEKIYYELIQTQKDIDRLRKMAEDQRNLIQEQNQRQAQVLRMEDDLERKRMQKHHEDQRRHNAELIMMQEKSSERKELARQASEEQIQYQKRQTERERAEIERETIRVKKMAEAEANVLEAKLTEDHNRRMLIERMHGERDKWVAAIHATFSHIEGGLRVLLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSRIMSQAKNKVLNYSTLAKAEKPAGSQNGLGNVILHPSLQRRIAHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGPQAVTKIHEIFDWAKKSKRGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPGEEERLKLLNLYLNKYLRDESNSSKGGLFLKKQPQKIVIKDLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCSLDSQLFKQIVDYKVVEHHQRLKLAAEGGLPA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00752 628 SMART AAA_5 385 518 IPR003593 -
Tsu05g00752 628 CDD AAA 381 516 - -
Tsu05g00752 628 Pfam ATPase family AAA domain-containing protein 3, N-terminal 50 317 IPR021911 -
Tsu05g00752 628 Coils Coil 219 239 - -
Tsu05g00752 628 MobiDBLite consensus disorder prediction 38 68 - -
Tsu05g00752 628 PANTHER PUTATIVE ATP-ASE 1 625 IPR039188 GO:0005739|GO:0007005
Tsu05g00752 628 MobiDBLite consensus disorder prediction 69 86 - -
Tsu05g00752 628 MobiDBLite consensus disorder prediction 38 86 - -
Tsu05g00752 628 Coils Coil 178 214 - -
Tsu05g00752 628 Coils Coil 118 159 - -
Tsu05g00752 628 Pfam ATPase family associated with various cellular activities (AAA) 389 516 IPR003959 GO:0005524|GO:0016887
Tsu05g00752 628 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 625 - -
Tsu05g00752 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 610 IPR027417 -
Tsu05g00752 628 Gene3D - 333 533 IPR027417 -
Tsu05g00752 628 ProSitePatterns AAA-protein family signature. 488 507 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00752 Tsu-Chr5 6333248 6339266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00752 387 592 Miscellaneous Gene Families AT5G53170 31.628 1.28e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00752 K17681 - gmx:100777755 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00752 05 6333248 6339266 Tsu05g00752 05 6333248 6339266 ECH