Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00742 ATGGTGCACAGTGCATACGATTGTTTAGAACTCGTTCCCAATTTCAACGGCAAGATCGAAGCAATCGAATCCTACGGTTCAAAGCTTCTACTAGGTTGCTCCGATGGATCTCTCCGAATTTACTCGCCGGAATCCGAATCCTCCTCTTCCGATCGTTCAAAACCTTACTTGCTTGAGAAGAATCTTACTGGTTTCGCGAAGAAGCCTATTGTTTCAATGGAAGTTGTTGAATCTAGAGAACTCCTTTTATCGCTCTCTGAATCCATCGCTTTTCATAGACTCTCTAATTTTGAAACTATAGCAGTTATAACCAAAGCTAAAGGTGCTAACGTTTTTTGTTGGGATGATCGGAGAGGGTTTCTTTGTTTCGCGAGACAAAAACGTGTTTGCATTTTCAGACATGATGGTGGTAGGGGATTTGTGGAGGTGAAAGAGTTTGGTGTACCGGATGTGGTGAAGTCTATGAGTTGGTGTGGGGAGAATATATGTTTGGGTATTAGAAGAGAATATATGATTTTGAATGCTTCAAACGGTGCTTTGTCTGAGGTTTTTACTTCTGGTAGACTCGCGCCGCCTTTAGTAGTGCCTATTCCATCCGGGGAGCTGCTTCTTGGGAAGGAGAATATTGGGGTCTTTGTGGATCAAAATGGGAAACTTATTCCTGAAGGCAGGATTTGTTGGTCAGAGGCGCCCTTGGAAGTTGTGATTCAGAAGCCGTATGCTATTGCTTTGCTGCCCAGATTCGTGGAGATTCGCTCTCTTCGACAACCTTATCCGTTGATACAAACTATTGTTCTTCGCAATGTTCGTCATATTTGCCAAAGCAGTAATTCTGTGATACTTGCTTTGGATAATTCTATTCAAGGTCTCTTCCCCGTTCCTCTTGGAGCCCAGATTGTCCAACTAACTGCTtctggcaactttgaagaggcTTTGTCATTGTGCAAGCTCCTTCCACCTGAAGAGTCAAGTCTACGTGCTGCAAAGGAGGGATCAATTCATATAAGATATGCCCATTATCTTTTTGAGAATGGAAGCTATGAGGAGGCTATGGACCATTTTCTGGCATCTCAAGTAGACATTACCTATGTGCTTTCTCTTTATCCATCCATTATCCTTCCAAAGACAACTATTGTTCATGAGCCAGAGAAGTTGGACATTGAAAGGGATGCTTCCCATCTCTCCAGAGTTTCGTCAGGTCTTTCAGATGATATGGAACCCTCACCATCTGACGAGAGTGCAGCACTTgaatccaaaaaaacaaaccaTAATATGCTTATGGGTCTCATAAAATATTTACAGAAGAAGCGAGGCAATTTTATTGAGAAGGCTACTGCAGAGGGAACTGAAGAAGTTGTCTTAGACGCAGTTGGGGATAGCTTTGCATCCTACAATAGGTTTAAGAAAGCAAACAAGGGGCGTGGTAATATGTCGGTTAGTTCTGGAGCTCGGGAGTTGGCTGCAATATTAGATACTGCTCTACTCCAAGCATTGCTTCTTACTGGACAATCTTCAGCGGCTTTAGAATTGCTTAGAGGTGTTAATTACTGTGATATGAAAATATGTGAAGAAATACTTCGGAAAGGCAACCTTAATGTTGCTTTATTGGAACTTTACAAGTGCAAGTCATTGCACCGGCAAGCTCTTGAACTTCTTCACAAGTTGGTGGAAGAGTCAATATCCAGTCAGTCTGAAATCACACAAAGGTTCAAGCCCGAGGACATTGTTGAATATCTAAAGCCGCTATGTGAGACAGACCCCATACTTGTTCTGGAATTCTCAATGCTTGTTCTCGAAAGCTGTCCAACCCAAACTATTGAGCTCTTTCTGTCCGGAAATATACCAGCGGATATGGTGAATTCATATTTAAAGCAGCACTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCGATGAATGAGAATGCCATATCTGGCAATCTGCAAAACGAAATGGTAAACATCTACCTATCTGAAGTACTTGATTGGCATGCTGACTTAAATGCTCAACAAAATTGGGATGAGAAAACTTACACCCCAACTAGGAAAAAATTATTGTCGGCTTTAGAAGGTATATCAGGATACAATCCAGAGGCTCTGCTGAAACGTCTTCCTCAAGATGCTTTATATGAAGAGCGTGCATTATTGTTGGGAAAAATGAACCAACATGAACTGGCGTTGTCTCTATATGTACATAAGcttcatgTTCCAGAATTGGCATTATCTTATTGTGATCGGGTGTATGAGTCTATGCATCAGCCATCTGTAAAAAAATCAAGCAACATATACCTATTGCTTCTGCAAATCTATTTGAATCCTCGAAGGACCACGGCAAGCTTTGAAATGAGAATTTCACATCTATTATCATCCCCACCAAGTTCAGCGATTTCTAGAGTTAGTTCAACATCTGTAAAAAGCAAAGGAGGCCGAGGAACCAAGAAAATTGCCGAGATTGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGTAGCACTGACAGTAGCAGGAGTGATGGTGATACGGATGAATTTAATGAAGGTGACTCCACTATCATGCTTGACGAGGTCCTTGACTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCAAGAGAGACAAAGTTACAGGATTTGCTATCATTTCTTGGACCCCTTTTGAGAAAATCTAGTGAAATGTACCGTAACTGTTCAGTAATCAAGAGCTTGAGACAGAGTGAGAATCTTCAGGTGAAAGATGAACTGTATAGTGAGAGGAAAGGAGTTGTAAAGGTAACTGGCGATAGCATGTGTTCTCTGTGCCGAAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCCAACGGGAGCACTCTTGTGCACTTCGTCTGTTTTAAAGATTCTCAAAATATGAAAGCAGTGACCAAAGGGTCTCAATTGAGGAAGCGATAG 2952 0.4133 MVHSAYDCLELVPNFNGKIEAIESYGSKLLLGCSDGSLRIYSPESESSSSDRSKPYLLEKNLTGFAKKPIVSMEVVESRELLLSLSESIAFHRLSNFETIAVITKAKGANVFCWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICLGIRREYMILNASNGALSEVFTSGRLAPPLVVPIPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHICQSSNSVILALDNSIQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEESSLRAAKEGSIHIRYAHYLFENGSYEEAMDHFLASQVDITYVLSLYPSIILPKTTIVHEPEKLDIERDASHLSRVSSGLSDDMEPSPSDESAALESKKTNHNMLMGLIKYLQKKRGNFIEKATAEGTEEVVLDAVGDSFASYNRFKKANKGRGNMSVSSGARELAAILDTALLQALLLTGQSSAALELLRGVNYCDMKICEEILRKGNLNVALLELYKCKSLHRQALELLHKLVEESISSQSEITQRFKPEDIVEYLKPLCETDPILVLEFSMLVLESCPTQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYLSEVLDWHADLNAQQNWDEKTYTPTRKKLLSALEGISGYNPEALLKRLPQDALYEERALLLGKMNQHELALSLYVHKLHVPELALSYCDRVYESMHQPSVKKSSNIYLLLLQIYLNPRRTTASFEMRISHLLSSPPSSAISRVSSTSVKSKGGRGTKKIAEIEGAEDTKVSLSSTDSSRSDGDTDEFNEGDSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLLSFLGPLLRKSSEMYRNCSVIKSLRQSENLQVKDELYSERKGVVKVTGDSMCSLCRKKIGTSVFAVYPNGSTLVHFVCFKDSQNMKAVTKGSQLRKR 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00742 983 Pfam CNH domain 26 273 IPR001180 -
Tsu05g00742 983 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 593 780 IPR000547 GO:0006886|GO:0016192
Tsu05g00742 983 MobiDBLite consensus disorder prediction 396 418 - -
Tsu05g00742 983 PANTHER VACUOLAR SORTING PROTEIN 39 1 983 - -
Tsu05g00742 983 SUPERFAMILY WD40 repeat-like 25 169 IPR036322 GO:0005515
Tsu05g00742 983 Pfam Region in Clathrin and VPS 618 748 IPR000547 GO:0006886|GO:0016192
Tsu05g00742 983 MobiDBLite consensus disorder prediction 792 847 - -
Tsu05g00742 983 PANTHER CNH DOMAIN CONTAINING 1 983 IPR032914 GO:0016192
Tsu05g00742 983 MobiDBLite consensus disorder prediction 792 810 - -
Tsu05g00742 983 Pfam Vacuolar sorting protein 39 domain 2 858 966 IPR019453 -
Tsu05g00742 983 ProSiteProfiles Citron homology (CNH) domain profile. 16 279 IPR001180 -
Tsu05g00742 983 Pfam Vacuolar sorting protein 39 domain 1 490 598 IPR019452 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00742 Tsu-Chr5 6256803 6262927 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00742 K20183 - gmx:100775609 1567.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00742 05 6256803 6262927 Tsu05g00742 05 6256803 6262927 ECH