Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00727 ATGAAGTGCCCGTACTGTTCGGCGGCGCAAGGTCGTTGCGCCACAACAACCACCGGAAAATCCATAACAGAATGCACATCTTGCGGCCGCGTAGTAGAAGAACGACAATCCCATCCTCACCATGTATTCCACCTCCGCGCCCAAGACAATCCCCTAAGTCTAGTCACATCAGATCTCCCTGTCCCCACACTCAACCAAAACATGGAACAACAAAACACCACCGCCGCCACCACAGCCACCACCACCAACGACGATGAAGAAGACCCGTTCGAGCCAACAGGCTTCATAACTACCTTCTCCACATGGTCTTTAGAGCATAATCCACTTTACCTTCAAtcatctctctctttttctgGCTATCTCGCTGAACTTGAACGAACTCTTGAATCGTCTTCTTCTGCTTCGTCTTCTagtgttgttgttgataatCTTAGGGCTTATATGCAGATTATCGATGTTTCTTCTATACTTGGATTAGATTGTGATATTTCTGATCATGCTTTTCAATTATTTAGGGATTGTTGTTCTGCTACTTGTTTGAGAAATCGTAGTGTTGAAGCTCTTGCTACTGCTGCTCTTGTTCAGGCTATTAGAGAAGCTCAAGAACCTAGAACCCTTCAGGAAATTTCAATTGCAGCGAATGTGGCACAAAAGGAAATTGGGAAATATATCAAGATATTGGGAGAAGCTTTACAGCTAAGTCAACCTATTAACAGCAATTCTATATCAGTTCATATGCCAAGATTTTGCACTCTTCTTCAGCTCAATAAATCTGCTCAGGAACTGGCTACTCACATTGGAGATGTTGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCAATCAGCATCTCAGCTGCCGCTATATATTTGGCTTGCCAACTAGAAGACAAACGCAAAACCCAGGCCGAAATTTGTAAAGTAACTGGTCTTACTGAAGTCACTCTCCGTAAAGTATACAAAGAATTACTGGAGAATTGGGATGATTTACTTCCCTCTAATTACACCCCAGCTGTTCCGCCAGAGCGGGCATTTCCCACAACTTTAATTGCTTCTGGACGTTCTTCAACAACTAAGGGTGATACTATAGAGGTTAGCTCTTCTTTGGACTCTGGAAATTTGCCGGAATTTAAACCAAACAAACCTACTGAGGTCTCGGTCGTGGTCCATCAGTCAAGAGGAAAGGATGAGGCCGATGGTAAAACCAATGCTCATGCTAGCCATTCCACAGCTATTCAACAGTCAACTTTCTGGCAATCCCAACTTCCCAGTGTGACACACAATCATCAAAATCAGAATATTTTAGAATCAATGGATATTGATACGTTGCAACGCAACCACCAACAAACTGAATCAATGGATGTCACAAATGGTGCAGCTACTGCTAGTTCTCTAAAATCAAGCCAACTTTACAGTCCTCCTGCCTCAAGTTCAAGCTCTGTTATGAGGTCGTTTTCAGCTCCTCCTTCATCTGCTCCTCCAAATATTCGATTACTGCAATCGTCTAAGACAATGCCAGGTTTTCCAGAGTACTGA 1536 0.4264 MKCPYCSAAQGRCATTTTGKSITECTSCGRVVEERQSHPHHVFHLRAQDNPLSLVTSDLPVPTLNQNMEQQNTTAATTATTTNDDEEDPFEPTGFITTFSTWSLEHNPLYLQSSLSFSGYLAELERTLESSSSASSSSVVVDNLRAYMQIIDVSSILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVAQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTLIASGRSSTTKGDTIEVSSSLDSGNLPEFKPNKPTEVSVVVHQSRGKDEADGKTNAHASHSTAIQQSTFWQSQLPSVTHNHQNQNILESMDIDTLQRNHQQTESMDVTNGAATASSLKSSQLYSPPASSSSSVMRSFSAPPSSAPPNIRLLQSSKTMPGFPEY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00727 511 CDD CYCLIN 246 324 IPR013763 -
Tsu05g00727 511 CDD CYCLIN 146 227 IPR013763 -
Tsu05g00727 511 PRINTS Transcription initiation factor IIB signature 216 231 IPR000812 GO:0006352|GO:0070897
Tsu05g00727 511 PRINTS Transcription initiation factor IIB signature 190 209 IPR000812 GO:0006352|GO:0070897
Tsu05g00727 511 PRINTS Transcription initiation factor IIB signature 279 295 IPR000812 GO:0006352|GO:0070897
Tsu05g00727 511 PRINTS Transcription initiation factor IIB signature 245 263 IPR000812 GO:0006352|GO:0070897
Tsu05g00727 511 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Tsu05g00727 511 PRINTS Transcription initiation factor IIB signature 311 325 IPR000812 GO:0006352|GO:0070897
Tsu05g00727 511 Gene3D - 144 235 - -
Tsu05g00727 511 SUPERFAMILY Cyclin-like 242 340 IPR036915 -
Tsu05g00727 511 SUPERFAMILY Cyclin-like 145 235 IPR036915 -
Tsu05g00727 511 MobiDBLite consensus disorder prediction 445 502 - -
Tsu05g00727 511 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 507 IPR000812 GO:0006352|GO:0070897
Tsu05g00727 511 Gene3D - 244 340 - -
Tsu05g00727 511 MobiDBLite consensus disorder prediction 352 374 - -
Tsu05g00727 511 MobiDBLite consensus disorder prediction 445 511 - -
Tsu05g00727 511 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 1 507 - -
Tsu05g00727 511 SMART cyclin_7 244 325 IPR013763 -
Tsu05g00727 511 SMART cyclin_7 148 229 IPR013763 -
Tsu05g00727 511 MobiDBLite consensus disorder prediction 352 413 - -
Tsu05g00727 511 Pfam Transcription factor TFIIB repeat 244 325 IPR013150 GO:0017025
Tsu05g00727 511 Pfam Transcription factor TFIIB repeat 146 227 IPR013150 GO:0017025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00727 K03124 - gmx:102662353 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00727 05 6140079 6143096 Tsu05g00727 05 6140079 6143096 ECH