Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00469 ATGGCAGCAACTATTCATCTTTCTTCCACTGCGTCTTCTCCATTCAAATCCACCAACAATATCAATCTCACTTCCTCCAATTCCATCTCTCAACAACTTCAATTCCATTCTAAGCCCCCTCCATCCAAACGCACCTCAACCCTCACCATAGCCCAACTAACCTCTCCTCCTCCCCCCCTTGGCAATGAATACTACAACAACTCTTCTTTACTTTATGGTATTGGTCGAACAGTTGAAGGATCAGATGAACGCACCAAAACTAAAATTGTTTGTACCATTGGTCCTTCTACCAGCTCACGTGATATGATTTGGAAACTTGCTCAAATGGGAATGAATGTTGCACGTTTGAATATGTCACATGGCGACCATACTTCACACCAGAAAACTATTGATTTTGTTAAACAATACAATTCTCAATTTCAAGACAGAGTTATCTCCATCATGCTTGACACCAAGGGTCCTGAAGTTAGAAGTGGGGATGTGCCCCAACCAATATTACTCAAAGAGGGGCAGACATTCAATTTCACTATTAATAGAGGGGTTTGCACACAAGATACTGTTAGTGTTAATTATGATGATTTTGTCAATGATGTTGAGGATGGAGACGTACTTCTTGTCGATGGAGGAATGATGTCTCTTGTTGTTAAGTCAAAGACAAAAGACTTAGTTAAATGTGAAGTTATTGATGGCGGAGAGCTGAAATCTAGGCGCCATTTGAATGTCCGTGGAAAAAGTGCAACACTTCCTTCAATAACTGAGAAGGACTGGGAAGATATCAAGTTTGGGGTAGACAATCAAGTAGACTTCTATGCTGTATCATTTGTCAAGGATGCTAGAGTGGTTTATGAGTTAAAAGAATACCtcaaaaGACACAATGCTGATATACACGTGATTGTAAAAATTGAAAGTGCAGATTCCATACCAAATCTCCATTCCATACTTTCAGCTTCAGATGGGGCTATGGTTGCTCGTGGGGACCTTGGAGCTGAACTTCCGATTGAGGAAGTTCCTTTATTGCAGGAGGACATCATTAGAAGATGTCGCAGAATGCAAAAGCCAGTTATTGTGGCAACAAATATGCTTGAAAGCATGATTATTCATCCCACACCAACTAGAGCAGAAGTCTCAGATATTGCAATTGCAGTAAGACAAGGTGCTGATGCTGTCATGCTTTCAGGAGAAACTGCACATGGAAAATTTCCATTGAAAGCTGCTAAAGTTATGCATGCCGTGGCTCTAAGGAATGAATCCACTGTTTTAAGAAGTGATGCTTATCCTAATCATTTGAGTTCCCACAAGAGCCATATGGGAGAAATGTTTGCTTTCCATGCAACAACTATGTCTAATACTCTTAATACTCCTATTATTGTGTTCACCAGAACTGGATCCATGGCTATTCTTTTGAGCCATTATAGGCCATACTCAACAATATTTGCATTCACAAATGAAGGAAGGATTAAGCAGAGGTTGGGACTTTATCATGGTGTGATGCCTATATACATGCAATTTTCAAATGATGCAGAGGAGACTTTTGCTAGAGCTCTCAAGTTACTATTGAGTAAAGGTCATTTAAACGAGGGACAATATGTTACTCTTGTTCAAAGCGGGGCGCAACCAATCTGGCGTGACGAATCCATTCACCGCCTTCAAGTTCGTGAGGTTCACGTATAA 1671 0.4045 MAATIHLSSTASSPFKSTNNINLTSSNSISQQLQFHSKPPPSKRTSTLTIAQLTSPPPPLGNEYYNNSSLLYGIGRTVEGSDERTKTKIVCTIGPSTSSRDMIWKLAQMGMNVARLNMSHGDHTSHQKTIDFVKQYNSQFQDRVISIMLDTKGPEVRSGDVPQPILLKEGQTFNFTINRGVCTQDTVSVNYDDFVNDVEDGDVLLVDGGMMSLVVKSKTKDLVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVDNQVDFYAVSFVKDARVVYELKEYLKRHNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQEDIIRRCRRMQKPVIVATNMLESMIIHPTPTRAEVSDIAIAVRQGADAVMLSGETAHGKFPLKAAKVMHAVALRNESTVLRSDAYPNHLSSHKSHMGEMFAFHATTMSNTLNTPIIVFTRTGSMAILLSHYRPYSTIFAFTNEGRIKQRLGLYHGVMPIYMQFSNDAEETFARALKLLLSKGHLNEGQYVTLVQSGAQPIWRDESIHRLQVREVHV 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00469 556 Pfam Pyruvate kinase, barrel domain 86 420 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 Gene3D - 154 249 IPR015806 GO:0004743|GO:0006096
Tsu05g00469 556 PANTHER PYRUVATE KINASE 76 555 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 83 419 IPR015813 GO:0003824
Tsu05g00469 556 Gene3D - 416 534 IPR036918 -
Tsu05g00469 556 SUPERFAMILY PK C-terminal domain-like 404 536 IPR036918 -
Tsu05g00469 556 Gene3D - 86 415 IPR040442 -
Tsu05g00469 556 SUPERFAMILY PK beta-barrel domain-like 154 245 IPR011037 -
Tsu05g00469 556 PRINTS Pyruvate kinase family signature 374 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 PRINTS Pyruvate kinase family signature 267 281 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 PRINTS Pyruvate kinase family signature 297 323 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 PRINTS Pyruvate kinase family signature 349 373 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 PRINTS Pyruvate kinase family signature 324 348 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 PRINTS Pyruvate kinase family signature 393 409 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 PRINTS Pyruvate kinase family signature 143 159 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 TIGRFAM pyruv_kin: pyruvate kinase 86 538 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Tsu05g00469 556 PANTHER PLASTIDIAL PYRUVATE KINASE 3, CHLOROPLASTIC 76 555 - -
Tsu05g00469 556 ProSitePatterns Pyruvate kinase active site signature. 295 307 IPR018209 GO:0004743|GO:0006096
Tsu05g00469 556 Pfam Pyruvate kinase, alpha/beta domain 445 534 IPR015795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00469 Tsu-Chr5 3631746 3635058 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00469 K00873 - gmx:100776984 826.239