Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00462 ATGAGTCTGGGGAATTCGTGCTTGGAGGGAAACAAAGTTGGTGGTGGTTCTTTATCGATTATTGgtattgatgatgatttggattTCACCGTACTTTTCTCAGTTCGACGATTCATCACCGTACTCTCGCTCGTAATTCAGAATTTCACTTCTTTTATACTCGCATCTAGTCTAGGATACGCACCGCTGCTGTCGTTATTTTATCATCATACAAAAAGCGTTTCAGTCTCAATTCTTGTTTGGGTGTTTACTTCGAGttatATATTGCGTGCTCTCTGGAAGCTTCTCTTTTTGGCCATTTTGGTCTCAGGAGGAATCGTCTTGCAAATTTTGGCATGTGCTTTGTATAGTAATTGGTGGCCAATGCTTAGTGTTATAACATATGTGCTTCTTCCGATGCCTTTGCTGTTCTTTGCTGGGTCTGATGGTTCTTCAATATATTCTGAATCTGATAATAGCTGGGTGAATTTCGCCAAGTTCTTGACCGGAGCATCAACTCTCGGAGGCATTGCCATTCCGAGCATATTAAAACATGCCGGGGTGATTGGTTGGGCAGCCTTTGCAATGGAACTGTCTTCTTTCTTTGTGTTTGTATTAGCTATATTATGTTTCCTGTGGCTGAGTGATGAAGATAATTACAGTATGCTATGA 651 0.4009 MSLGNSCLEGNKVGGGSLSIIGIDDDLDFTVLFSVRRFITVLSLVIQNFTSFILASSLGYAPLLSLFYHHTKSVSVSILVWVFTSSYILRALWKLLFLAILVSGGIVLQILACALYSNWWPMLSVITYVLLPMPLLFFAGSDGSSIYSESDNSWVNFAKFLTGASTLGGIAIPSILKHAGVIGWAAFAMELSSFFVFVLAILCFLWLSDEDNYSML 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00462 216 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG 94 213 - -
Tsu05g00462 216 Pfam Vacuolar protein sorting 55 96 211 IPR007262 -
Tsu05g00462 216 PANTHER LEPTIN RECEPTOR-RELATED 94 213 IPR007262 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00462 Tsu-Chr5 3572189 3575205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00462 94 213 EF-hand Containing Proteins AT1G32410 71.074 9.18e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00462 - - gmx:100500037 212.616