Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00459 ATGCAGGTTCTTCTTCACCACTCAGCAATCCTGATTCGTAGTTCTTGTTTCAATATAAGGCGCTTCTCTCTCGCAAACAACCATTCTCTACCCTTCAAACCTCTCTTTCCTTTTCCTCGTAATAATTACCAATGCGACGAGTCTCAGCTCCTCCACTACCTTACAAAAGGGTTACTTCAAGAAGCACGAAATATGCTTCACTATTTTCCATATGGAAACCTCCACCGCCGTGTTGTTCACTGGACCTCTTTGCTCACCAACTATGCAAAACATGGTTATGTAGAAGAAGCTCGAAACCTGTTCGACATAATGCCTCACAGAAATATTGTCACTTACAATGCAATGTTGTCCGCATATCTTCAATCTGGTATGATTGATAAGGGACAGCGGTTTTTTTATGATATGCCGGAGAGGAATGTTGTTTCTTGGACTGCAATGCTTAGTGGGTTTGCTGATGCGGGAAGGATTGAAGATGCGAGAAAGGTATTTGATGAAATGCCTGAGAAGAATGTTGTTTCGTGGAACTCGATGGTGGTTGGGTTGATTAGGAatggtgatttggaggaagCCAGAAAAGTTTTTGACAATATCCCTTTTAAAAATGTGGTGTCTTGGAATGCTATGATTGAGGGTTATGTTGAAAATGGTagaatggaagaagcaagagtTTTGTTTGATCAAATGGGGTGTTGGAATGTGATTACTTGGACTAGTATGATATCTGGGTATTGTCGTGTGGGTGATGTGGATGAGGCTTGTTGTTTGTTCCGGAGTATGCCGGAGAAAAATGTTGTTTCCTGGACTGCAATGATTGGTGGGTTCACTTGGAATGGATTATATCGAGAGGCGTTGTTGCTTTTTCTTCAGATGACAACACTTTCTGTTGCAAAACCTAATGGGGAGACCTTTGTTTCTCTTGTCTATGCATGTGCTGGCTTGGGGTTTCCTTGTCTTGGCAAGCAATTGCATGCTCAGATGATTGTTAACAGTTGGAAGCTTGATGATTATGATGGTAGGTTAGGGAGAAGTCTTGTTAGGATGTATTCTGTGTGTGGGCTTATGGACTCTGCACGCAGTGTGTTTGAAGGTGATCTGAAAATTTGTGATGATCAGTCTTTAAATTCTATGATAAATGGTTATGTTCAGGCTGGTCAATTAGATAAGGCTCAAGAGTTGTTTGCCATGGTCCCTATTCGAAACAAAGTTTCCTCGACTTGCATGATTTCTGGGTATCTTAGTGTTGGACAAGTATTGAAGGCATGCAATCTCTTTGATGACATGCCTGATAGTGATAAAGATTCCATTGCATGGACTTCAATGATTTATGGGTATGTCCAAAATGAGCTAATTGCTGAAGCGATCAGCTTATTTGCTAAAATGATGGCACAAGGTGCTTCTCCTATAAATTCTACTTATGCTGTTCTTTTTGGAGCCGTGGGATCTGTTGCATATCTTGATTTGGGGAAGCAATTACATGCTATGCAGTTAAAGACTATTTATGATTATGAATATGATTTGTATCTCGAGAACTCTCTGATTTCGATGTATGCAAAATGTGGGGAGATAGAGGATGCATATCGGATATTCTCAAACATGACTGGTCGAGACAAAATTTCGTGGAACTCCATGATCATGGGCCTTTCGGATCATGGAAGAGCCATTGAAGCTTTGAAGATGTACGAAACCATGCTTGAATTTGGGGTTTACCCAGATGCTGTTACTTTCCTTGGTGTCCTAACAGCATGTGCTCATGCTGGTCTTGTTGATAAAGGGTGTGAGTTGTTTAGTGTTATGATCAATGATTATGCACTTCAACCTGGCATGGAGCATTATGTTAGCATGATCAATCTTCTGGGCCGAGCTGGAAGAGTGAAGGATGCAGAGGAGTTTGTGTTGAAGCTACCTGTTGAACCAAATCATACCATTTGGGGGGCATTGATTGGAGTGTGTGGTTTGAGTAAAATAGATGCAGATGTTGCTAGACGTGCAGCCACACGACTGCTTGAGTTGGATCCTCTGAACGCACCAGGTCATGTGACCCTTTGCAACATATACGCTGCAAATGATAGACACATTGAAGAGACAACTTTAAGAAGAGAAATGAGGATGAAAGGTGTTAGGAAGACACCTGGATGTAGTTGGATATTAGTGAAGGGTAGAGTTCATGTTTTCTCATTAGGGGATAGATTAGAACCACAAGGAGAATATATGTTGCTACAtatttaa 2226 0.4048 MQVLLHHSAILIRSSCFNIRRFSLANNHSLPFKPLFPFPRNNYQCDESQLLHYLTKGLLQEARNMLHYFPYGNLHRRVVHWTSLLTNYAKHGYVEEARNLFDIMPHRNIVTYNAMLSAYLQSGMIDKGQRFFYDMPERNVVSWTAMLSGFADAGRIEDARKVFDEMPEKNVVSWNSMVVGLIRNGDLEEARKVFDNIPFKNVVSWNAMIEGYVENGRMEEARVLFDQMGCWNVITWTSMISGYCRVGDVDEACCLFRSMPEKNVVSWTAMIGGFTWNGLYREALLLFLQMTTLSVAKPNGETFVSLVYACAGLGFPCLGKQLHAQMIVNSWKLDDYDGRLGRSLVRMYSVCGLMDSARSVFEGDLKICDDQSLNSMINGYVQAGQLDKAQELFAMVPIRNKVSSTCMISGYLSVGQVLKACNLFDDMPDSDKDSIAWTSMIYGYVQNELIAEAISLFAKMMAQGASPINSTYAVLFGAVGSVAYLDLGKQLHAMQLKTIYDYEYDLYLENSLISMYAKCGEIEDAYRIFSNMTGRDKISWNSMIMGLSDHGRAIEALKMYETMLEFGVYPDAVTFLGVLTACAHAGLVDKGCELFSVMINDYALQPGMEHYVSMINLLGRAGRVKDAEEFVLKLPVEPNHTIWGALIGVCGLSKIDADVARRAATRLLELDPLNAPGHVTLCNIYAANDRHIEETTLRREMRMKGVRKTPGCSWILVKGRVHVFSLGDRLEPQGEYMLLHI 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00459 741 Pfam E motif 657 715 IPR046848 -
Tsu05g00459 741 Pfam PPR repeat 232 259 IPR002885 -
Tsu05g00459 741 Gene3D Tetratricopeptide repeat domain 263 337 IPR011990 GO:0005515
Tsu05g00459 741 Gene3D Tetratricopeptide repeat domain 338 398 IPR011990 GO:0005515
Tsu05g00459 741 Gene3D Tetratricopeptide repeat domain 194 262 IPR011990 GO:0005515
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 107 IPR002885 -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 111 201 - -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 266 728 - -
Tsu05g00459 741 Gene3D Tetratricopeptide repeat domain 47 193 IPR011990 GO:0005515
Tsu05g00459 741 Gene3D Tetratricopeptide repeat domain 503 726 IPR011990 GO:0005515
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 198 265 - -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 198 265 - -
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 535 IPR002885 -
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 231 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 510 533 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 234 265 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 80 109 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 436 467 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 405 430 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 141 171 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 203 228 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 172 196 IPR002885 -
Tsu05g00459 741 TIGRFAM PPR: pentatricopeptide repeat domain 110 141 IPR002885 -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 201 - -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 266 728 - -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 111 - -
Tsu05g00459 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 27 111 - -
Tsu05g00459 741 SUPERFAMILY TPR-like 203 690 IPR011990 GO:0005515
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 138 IPR002885 -
Tsu05g00459 741 Gene3D Tetratricopeptide repeat domain 399 502 IPR011990 GO:0005515
Tsu05g00459 741 Pfam PPR repeat family 432 478 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat family 536 583 IPR002885 -
Tsu05g00459 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 141 171 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 372 393 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 203 229 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 110 140 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 79 109 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 402 429 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 265 291 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 510 534 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 172 196 IPR002885 -
Tsu05g00459 741 Pfam PPR repeat 610 631 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00459 Tsu-Chr5 3560037 3562262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00459 22 734 Glycoside Hydrolase AT3G49170 30.848 9.45e-86 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00459 - - gmx:102669560 1103.97