Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00457 ATGGCGCCAGTTTCAGCTCTAGCAAAATACAAGCTAGTGTTCTTGGGTGACCAATCCGTTGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACAATACTTATCAGGCAACAATTGGCATTGATTTTCTATCGAAAACCATGTATCTTGAAGATCGAACTGTTCGACTACAGTTGTGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCGAGCTACATCAGGGACTCATCTGTAGCTGTTGTTGTGTATGATGTTGCAAGTCGGCAAACTTTCCTGAACACAACAAATTGGATTGAGGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTCGTTGAGAAGAGACAAGTCTCCATAGAGGAAGGGGAAGCAAAAGCACGTGAGCTGAATGTCATGTATATTGAAACTAGCGCTAAAGCTGGATTTAATATTAAGGCCCTTTTTCGGAAAATTGCTGCTGCATTACCTGGAATGGAAACAGTATCTTCTGCAAAACAAGAGGGCATGGTTGATGTAAACTTAAAGTCTTCATCTGGCAATGCTCAAGCTCAGTCAAGTGGATGTTCTTGTTGA 618 0.4175 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQTFLNTTNWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMYIETSAKAGFNIKALFRKIAAALPGMETVSSAKQEGMVDVNLKSSSGNAQAQSSGCSC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00457 205 SMART rab_sub_5 10 173 - -
Tsu05g00457 205 CDD Rab6 10 170 - -
Tsu05g00457 205 PANTHER DRAB5-RELATED 1 205 - -
Tsu05g00457 205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 177 IPR027417 -
Tsu05g00457 205 SMART ran_sub_2 15 205 - -
Tsu05g00457 205 Gene3D - 6 201 IPR027417 -
Tsu05g00457 205 SMART ras_sub_4 7 173 - -
Tsu05g00457 205 PANTHER GTP-BINDING PROTEIN RAB6 1 205 - -
Tsu05g00457 205 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Tsu05g00457 205 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Tsu05g00457 205 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Tsu05g00457 205 ProSiteProfiles small GTPase Ras family profile. 5 205 IPR001806 GO:0003924|GO:0005525
Tsu05g00457 205 PRINTS Transforming protein P21 ras signature 10 31 - -
Tsu05g00457 205 PRINTS Transforming protein P21 ras signature 33 49 - -
Tsu05g00457 205 PRINTS Transforming protein P21 ras signature 51 73 - -
Tsu05g00457 205 PRINTS Transforming protein P21 ras signature 113 126 - -
Tsu05g00457 205 PRINTS Transforming protein P21 ras signature 148 170 - -
Tsu05g00457 205 ProSiteProfiles small GTPase Rab1 family profile. 5 205 - -
Tsu05g00457 205 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00457 Tsu-Chr5 3549538 3555410 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00457 K07893 - gmx:100794537 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00457 05 3549538 3555410 Tsu05g00457 05 3549538 3555410 ECH
Tsu05g00457 05 3549538 3555410 Tsu04g02276 04 25377508 25383967 PCT