Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00455 ATGGACTCACAGCAGAACAATCTATTCGACACCGCTTCGCAACCCGATACAGGTAACGACGCTTACACTTTCCTTGAATTCAACACTCAAGGTGAAGATTTCGACTATCCAGAGTTTCGTGACCCGATTAGGTCACCGGTTGCATGGCCAACGCCTTCCGATTCACTTGCTGACCCATCGGAAAGAGGTGGAACCGGGTCGGATCATCAGTCTGATGCATCACCTGTTTCTGCTGCTCCTGGAAGCGCGACAAAAGGTGGTAGGTCGGGAAGCGGTAGTGGAAGTGGGTCACAGATGGTGGATTCGCTTGCTGCAGGGATGAGTGGGTTGAATTTTGAAGATACTGGTGATGATGATAATTATGAGTTTGGTAAAGGGGATTTCACTGAACATGCTTGTCGTTATTGTGGAGTCTCTAATCCAGCTTGTGTCGTTAGGTGTAATGTACCTTCGTGTCGTAAATGGTTTTGTAATTCTAGGGGAAATACTTCTGGATCGCACATTGTTAATCATCTGgTTCGGGCAAAGCACAAGGAAGTCTGTCTGCACAAAGATAGTCCATTGGGTGAAACGATTCTTGAATGCTACAACTGTGGGTGCCGTAATGTGTTTCTCCTTGGATTTATATCTGCAAAGACAGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGTTTGAGTGTCAATGCTTTGAAGGATATGAATTGGGATCTTAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCACGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAATTGTGGAAAACAAACCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGACGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAACGTCACAATTCGATGGGATATCGGTCTCAATAAGAAGCGCGTTGCGTATTTTGTATTTCCAAAGGAAGATAATGAGTTACGGCTTGTGCCTGGCGATGAGCTACGTCTGCGTTATTCCGGTGATGCTGCACATCCTTCATGGCAGTCAGTTGGTCACGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAACTTCGGGCTAGTCAGGGGGTTCCAGTTGATGTCAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACTAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCTGTAGATGAGACAAGTGTCAGTGGGTATATCTATCACCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCTCGCCGCTTTGGTGCACCGGGGCTTCCAGAGCTGAATGCATCTCAAGTGTTTGCTGTCAAGAGTGTCCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGCAAGACTGTAACGTCTGCAGCACTTGTATATCACATGGCCAAACAAGGTCAAGGACAGGTTTTGGTTTGTGCACCTAGTAATGTAGCCGTGGACCAGTTGGCTGAAAAAATAAGTGCTACTGGATTGAAGGTTGTGAGGCTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACGCTTCACTATCAGGTTCGGCATCTTGACACATCTGATAAGAGTGAACTTCACAAGTTACAACAGCTGAAGGATGAACAAGgGGAACTTTCTAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATTTGCTGTACATGTGTTGGCGCTGGAGATCCTCGGCTTGCAAATTTTAGATTTCGTCAGgtACTTATTGACGAGTCCACTCAAGCAACAGAACCCGAGTGCCTCATTCCTTTGGTTCTAGGAGCAAAGCAGGTCGTTCTTGTTGGTGATCATTGTCAACTTGGTCCTGTTATTATGTGTAAGAAAGCAGCCCGTGCTGGGTTAGCACAGTCACTTTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTCTCAGAATTTCCCTCAAACAGTTTTTATGAAGGGACCCTACAAAACGGAGTTACTGTTAACGAGAGGCAATCTACAGGAATTGATTTTCCATGGCCTGTACCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACGTCTTACTTGAATAGGACCGAGGCTGCAAATGTCGAAAAGATTGTAACTACTTTTTTAAAAAGTGGTGTGGTTCCAAGTCAGATCGGTGTCATTACACCTTATGAGGGGCAAAGAGCTTATATTGTAAACTATATGTCAAGAAATGGTGCTCTTAGACAGCAACTTTACAAAGAGATTGAGGTTGCCAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTTTATCATGTGTTAGAAGTAATGAACATCAGGGAATTGGATTCCTGAATGACCCTAGGAGGCTCAATGTTGCTCTGACACGAGCTAGATATGGTATTGTTATACTGGGAAACCCCAAAGTTCTGAGCAAGCAGCCTCTATGGAATGGTTTATTGACTCACTATAAGGAACATGAATGCTTGGTTGAAGGGCCTCTAAATAACTTGAAGCAGAGTATGGTTCAATTCCAGAAACCCAAAAAGATTTACAATGAACGTAGGCTTTTTTATGGGGGAGGACCTGGAGTTGCCGCTAATGATAATTTTGGTTCTGGTGCTGGCTCAAGTTCAGATCGGAGGAGTGGCCGAGGAAGGGGATCTTATATACCTTCTGGTCCACCAAATGGTAATCACAAACCGGGACTGCATCCTGCTGGGTTTCCTGTGCAAAGGGTTCCCTTGCCTCCGTTTCATGGTGGTCCTCAATCTCAACCATATGCCATTCCTTCTCGTGGAGCAGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCAGGTAGTCGGGGTTTTGGGGCTGGGAGAGGTAATTCCGGTGCTCCAATTGGCAATCATCTCCCACACCAACAAGGCACGCAGCAGCCTATTGGGAATCTTGGATCTGCATTTAATTTCCCTGCTCTAGAGAATCCTAACAGCCAGCCGTCTGTTGGTGGTCCATTGTCTCAACCTGGCTTTGCTAATAATATGCCGGTACAAGGGGCGGGTCAGTCATTTCGAGATCAATTTTCTGTTCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAGAGCCAAGGTTCTCATGTTCCTTACAATGTAACTGATTTCTCTACACAGGTTTGTGAActattttggttaattttgtaTGTGTCAAGTCTATTTGTTTTTACGAGACCTAAACCTCATATTATCAGCAAACAGGGCATCTggctcttttattttcttttcattaatAATTTGCATCAGATGTTCACAtctatatgttatttttttgcCTATTAA 3579 0.437 MDSQQNNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGGTGSDHQSDASPVSAAPGSATKGGRSGSGSGSGSQMVDSLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPSWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAANDNFGSGAGSSSDRRSGRGRGSYIPSGPPNGNHKPGLHPAGFPVQRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNLGSAFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQVCELFWLILYVSSLFVFTRPKPHIISKQGIWLFYFLFINNLHQMFTSICYFFAY 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00455 1192 CDD DEXXQc_UPF1 481 716 - -
Tsu05g00455 1192 MobiDBLite consensus disorder prediction 1047 1091 - -
Tsu05g00455 1192 MobiDBLite consensus disorder prediction 58 100 - -
Tsu05g00455 1192 Pfam Type III restriction enzyme, res subunit 487 549 IPR006935 GO:0003677|GO:0005524|GO:0016787
Tsu05g00455 1192 Pfam AAA domain 581 684 IPR041677 GO:0004386
Tsu05g00455 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 940 IPR027417 -
Tsu05g00455 1192 CDD 1B_UPF1-like 337 424 IPR040812 -
Tsu05g00455 1192 Pfam RNA helicase (UPF2 interacting domain) 131 284 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Tsu05g00455 1192 Gene3D - 445 715 IPR027417 -
Tsu05g00455 1192 Pfam AAA domain 694 889 IPR041679 -
Tsu05g00455 1192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 622 IPR014001 -
Tsu05g00455 1192 MobiDBLite consensus disorder prediction 1 100 - -
Tsu05g00455 1192 PANTHER DNA2/NAM7 HELICASE FAMILY 107 1009 IPR045055 -
Tsu05g00455 1192 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 107 1009 - -
Tsu05g00455 1192 MobiDBLite consensus disorder prediction 1 26 - -
Tsu05g00455 1192 Gene3D - 567 619 - -
Tsu05g00455 1192 Gene3D - 716 927 IPR027417 -
Tsu05g00455 1192 Pfam RNA helicase UPF1, 1B domain 336 425 IPR040812 -
Tsu05g00455 1192 Gene3D - 337 425 - -
Tsu05g00455 1192 CDD SF1_C_Upf1 717 906 IPR041679 -
Tsu05g00455 1192 CDD ZBD_UPF1-like 132 254 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Tsu05g00455 1192 MobiDBLite consensus disorder prediction 949 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00455 Tsu-Chr5 3532138 3544138 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00455 K14326 - gmx:100795594 2211.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00455 05 3532138 3544138 Tsu05g00455 05 3532138 3544138 ECH