Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00453 ATGGCGGATACGGTGGAGCTTCCGAGTCGGTTAGCAATTCTTCCTTTCAAGAACAAAGTTCTATTACCTGGCGCCATAATCCGAATCCGTTGCACTTCACCTACTAGTGTGAAGTTGGTGGAACAAGAACTGTGGCAACGAGAAGAGAAAGGGTTGATTGGTATTTTGCCAGTACGTgatgctgctgctgctgcttcTGAAACTCCTACTGTATCAGATTCTGTAGACCAAACCTCAAAAGTTCATCATGGTGGTTCATCAGATTCTAATACCAAAGTTCAAAATGATGCTGTTCATTGGCATAACAGGGGGGTAGCTGCTCGAGCGTTACACTTATCGAGGGGAGTGGAGAAACCGAGTGGGAGGGTCACATATATAGTTGTTCTTGAAGGTTTGTGCAGATTTAATGTACAGGAACTAAGCACAAGAGGAACATACCATACTGCAAAAATCTCTTCCCTTGAGATGACTAAGACCGAGATGGAACAGGTGGAGCATGACCCGGATTTTATAATGTTATCACGTCAATTTAAAGCAACAGCCATGGAGCTTATTTCTGTTCTGGAGCAGaaaCAAAGTACCGGTGGAAGGACGAAAGTTCTTTTGGAGACTGTTCCTGTTCACAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAATTATCAATGTTGGATTCTGTTGATGCTAAAGTGAGGCTTTCAAAAGCAACTGAATTGGTTGATAGGCATTTACAGTCCATACGTGTAGCTGAGAAAATTACACAAAAAGTTGAAGGACAGTTGTCAAAATCTCAAAAAGAGTTTCTTCTGCGCCAGCAGATGAAAGCTATAAAGGAGGAACTTggtgataatgatgatgaggaggaTGACCTAGCTGCCTTGGAAAGGAAGATGCAAAGTGCAGGAATGCCACAAAATACCTGGAAGCTTGCTCTTAGAGAGTTTAGGAGATTGAAAAAAATGCAGCCTCAGCAACCTGGTTATAACAGTTCACGGGCTTACCTGGAACTTCTTTCTGATCTGCCATGGCAGAAGGCCAGCAAAGAGCATGATCTGGACTTAAGAGCTGCACAGGAGCGCCTGGACAATGATCACTATGGTTTAGTGAAGGTCAAGCAACGGATCATTGAATACCTTGCTGTTCGTAAGCTTAAGCCAGATGCAAGAGGTCCTGTGTTGTGCTTCGTTGGACCTCCTGGTGTTGGGAAAACATCATTGGCATCTTCTATTGCTGCTGCTCTGGACCGAAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTTATAGATGGACTGAAGAAAGTAGCCGTTTGCAATCCCGTCATGTTGCTAGATGAAATCGACAAGACAGGTTCTGATGTTCGTGGGGATCCAGCTTCAGCATTGCTAGAGGTTCTTGATcctgaacaaaataaaacattcaaTGATCACTATTTGAATGTTCCATTCGATCTATCCAAGGTAATTTTTGTTGCTACAGCAAATAGGGCACAACCTATTCCTCCACCTCTCCTTGACAGGATGGAAGTCATTGAGCTTCCTGGGTATACACCCGAGGAAAAGCTCAAAATAGCCATGCGGCATTTAATTCCAAGAGTTCTGGACCAACATGGGTTGAGTTCTGAGTTTCTTCAAATCCCAAAGGCGATGGTGCAACTTGTTATTCAGAGATATACTAGGGAAGCTGGTGTTCGAAGTTTGGAAAGGAATCTAGCTGCCCTTGCTCGTGCTGCTGCAGTGAGAGTAGCAGAGCAAGAACAAGTAGTTCCACTTAGCAAAGGAGTAGAGGGACTTAGTACACCGCTTCTGGAAAATAGACTTGTCGATAGCGCTGAGGTGGAAATGGAAGTGATACCAATGGGTGTCAACAACCGTGACATTTCAAACACATTTAGGATCACTTCTCCACTGGTTGTTGATGAAGCTATGGTTGAAAAAGTGCTCGGGCCTCCAAAGTTTGATGGAAGAGAAACAGCAGAACGTGTTGTAACCCCTGGGATATGTGTTGGGCTGGTTTGGACTACTTTTGGTGGTGAAGTTCAGTTTGTGGAGGCTTCAACAATGGTAGGGAAAGGTGAATTGCATCTTACTGGACAACTTGGTGATGTGATCAAAGAATCGGCTCAAATTGCACTAACATGGgtAAGAGCAAGGGCAGCTGATCTCAAACTGACTTCTGCGGAGGGCATTAATCTGTTGGAGGGTCGTGATATACATATACATTTTCCTGCAGGTGCAATACCTAAAGATGGGCCTTCAGCTGGTGTAACTTTAGTCACAGCATTGGTTTCTCTTTTCAGTCAGAGAAAAGTGAGATCTGATACCGCTATGACTGGAGAGATGACGTTGAGGGGTCTAGTACTGCCCGTTGGTGGTATTAAGGATAAGATACTAGCTGCACATCGATATGGTATTAAGAGAGTCATCCTACCTGAAAAGAACTTAAAGGACTTGGTTGAAGTACCACCAACAGTGCTAGCCAATTTGGAGATACTGCTTGCAAAACGAATGGAGGATGTGTTAGAACAAGCTTTTGACAGTGGGTGCCCTTGGAGACAACACTCAAAATTGTAA 2646 0.4282 MADTVELPSRLAILPFKNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGLIGILPVRDAAAAASETPTVSDSVDQTSKVHHGGSSDSNTKVQNDAVHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFNVQELSTRGTYHTAKISSLEMTKTEMEQVEHDPDFIMLSRQFKATAMELISVLEQKQSTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDAKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMKAIKEELGDNDDEEDDLAALERKMQSAGMPQNTWKLALREFRRLKKMQPQQPGYNSSRAYLELLSDLPWQKASKEHDLDLRAAQERLDNDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALDRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKKVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLKIAMRHLIPRVLDQHGLSSEFLQIPKAMVQLVIQRYTREAGVRSLERNLAALARAAAVRVAEQEQVVPLSKGVEGLSTPLLENRLVDSAEVEMEVIPMGVNNRDISNTFRITSPLVVDEAMVEKVLGPPKFDGRETAERVVTPGICVGLVWTTFGGEVQFVEASTMVGKGELHLTGQLGDVIKESAQIALTWVRARAADLKLTSAEGINLLEGRDIHIHFPAGAIPKDGPSAGVTLVTALVSLFSQRKVRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPEKNLKDLVEVPPTVLANLEILLAKRMEDVLEQAFDSGCPWRQHSKL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00453 881 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 774 782 IPR008268 GO:0004176|GO:0004252|GO:0006508
Tsu05g00453 881 Gene3D - 166 290 - -
Tsu05g00453 881 Gene3D - 359 537 IPR027417 -
Tsu05g00453 881 Coils Coil 282 302 - -
Tsu05g00453 881 Pfam ATPase family associated with various cellular activities (AAA) 398 535 IPR003959 GO:0005524|GO:0016887
Tsu05g00453 881 SUPERFAMILY Ribosomal protein S5 domain 2-like 689 869 IPR020568 -
Tsu05g00453 881 SMART AAA_5 394 539 IPR003593 -
Tsu05g00453 881 PIRSF Lon_proteas 642 872 IPR004815 GO:0004176|GO:0005524|GO:0006508
Tsu05g00453 881 PIRSF Lon_proteas 1 625 IPR004815 GO:0004176|GO:0005524|GO:0006508
Tsu05g00453 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 612 IPR027417 -
Tsu05g00453 881 ProSiteProfiles Lon N-terminal domain profile. 11 247 IPR003111 -
Tsu05g00453 881 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 801 820 - -
Tsu05g00453 881 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 402 421 - -
Tsu05g00453 881 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 771 790 - -
Tsu05g00453 881 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 689 705 - -
Tsu05g00453 881 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 824 842 - -
Tsu05g00453 881 Gene3D - 538 677 - -
Tsu05g00453 881 Gene3D - 2 155 IPR046336 -
Tsu05g00453 881 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 881 IPR027501 GO:0004252|GO:0006515
Tsu05g00453 881 SMART lon_5 10 247 IPR003111 -
Tsu05g00453 881 Pfam Lon protease (S16) C-terminal proteolytic domain 663 869 IPR008269 GO:0004176|GO:0004252|GO:0006508
Tsu05g00453 881 MobiDBLite consensus disorder prediction 67 92 - -
Tsu05g00453 881 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 247 IPR003111 -
Tsu05g00453 881 CDD AAA 379 540 - -
Tsu05g00453 881 ProSiteProfiles Lon proteolytic domain profile. 686 871 IPR008269 GO:0004176|GO:0004252|GO:0006508
Tsu05g00453 881 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 881 - -
Tsu05g00453 881 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 881 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Tsu05g00453 881 MobiDBLite consensus disorder prediction 66 92 - -
Tsu05g00453 881 SUPERFAMILY PUA domain-like 10 246 IPR015947 -
Tsu05g00453 881 Gene3D - 298 346 - -
Tsu05g00453 881 TIGRFAM lon: endopeptidase La 13 869 IPR004815 GO:0004176|GO:0005524|GO:0006508
Tsu05g00453 881 Gene3D - 688 875 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00453 Tsu-Chr5 3503052 3512228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00453 K01338 - gmx:100796650 1525.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00453 05 3503052 3512228 Tsu05g00453 05 3503052 3512228 ECH