LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g00447	ATGGCTCTAACACTTCgttcttcaatttcttccattagtaagaaagaaacaagaatctTAAAATCTCTTGATGATTTTTCTGTCTACAAAGTTTCTTGTCCAAAAAGTAAACCATTTTTTGGTCTCAAAGCAAAGAGTTCAATGCAAGAAACACAATTCACAGCAGAAAACACCAACTCTGtagtaaagaaaaacaagaattgGGAGACGACTCATGTGCCGTCGGTTGCACATAACCACGACGCTGATTTGAATAGAGTACCGGTGTTTGTGATGTTGCCATTAGACACAGTAACAATGGGAGGAAAATTGAATAAAGCAAGAGCAATGAATGCTGGTTTGATGGCACTAAAGAGTGCTGGTGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTTGAAAAAGATGGTCCTATGAAGTATAATTGGGAAGCTTATGCTGAACTTGTTTTAATGGTACAAAAACATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGTGGAAATGTTGGTGACTCCTGCAGTATTCCTCTACCTCCATGGGTGCTGGAAGAAATCAGCAAGAACCCCGAACTGGTTTACACAGACAAATTAGGGAGGAGGAATCCTGAATATATCTCATTGGGTTGTGATTCAGTGCCTGTTCTTGCCGGAAGGACACCACTTCAAGTTTACGCCGATTACATGAGAAGCTTCCGTGACAGATTTACAGATTATTTGGGCAATGTTATCATAGAAATTCAAGTGGGACTTGGTCCTTGTGGGGAGCTGAGATATCCTTCTTATCCTGAAACTGATGGAACTTGGACATTTCCAGGCATTGGAGAATTCCAATGTTATGACaagTATATGAGATCTTCCTTGGAAGCATCAGCACAAGCAATTGGGAAGAAAGAGTGGGGAACAAGTGGACCTCATGACTCAGGTCAATATAATCATAGCCCTGAGGATACAGGATTTTTCAAAAGAGAAGGAACATGGAACACAGAATATGGTGATTTCTTCCTTGATTGGTACTCAAGTAAACTTGTTGAACATGGTGAGAAAATCCTTGTATCAGCAAAAAGCATATTCCAATCAAGTGGAGCAAAACTATCAGCAAAAATAGCTGGAATTCATTGGCATTACAATGCAAGATCACATGCAACTGAATTAACAGCAGGTTACTATAACACAAGGTTTCATGATGGTTATATACCAATAGCACAAATGCTAGCAAAACATGGAGTAATATTGAATTTCACATGCATGGAAATGAAGGATAATGAACAACCTTGTGATGCAAATTGTTCACCAGAAGGATTAGTTAATCAAGTGAGGATGGCAACAAGGATTGCAGGTGGTGAACTTGCTGGTGAGAATGCATTGGAGAGACATGATTCAAGTGCTTATGGTCAAGTTTCATCAACAAGAGGATTAAGTGCTTTTACTTATTTAAGGATAAATAAGAGGATGCTTGAGGGTGAAAATTGGAGGCAATTTGTGGATTTTGTTGTGAGTATGTCTCATGGTGGTAAACAAAGGCTTTCGGAAGTTGATTCTTATGGGACTGATCTTTATGTTGGACACATACTTAAGGAGAATGATGTTATAGTAGAGATTGCTCTTGTGTGA	1626	0.3776	MALTLRSSISSISKKETRILKSLDDFSVYKVSCPKSKPFFGLKAKSSMQETQFTAENTNSVVKKNKNWETTHVPSVAHNHDADLNRVPVFVMLPLDTVTMGGKLNKARAMNAGLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEAYAELVLMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPELVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYADYMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGTWTFPGIGEFQCYDKYMRSSLEASAQAIGKKEWGTSGPHDSGQYNHSPEDTGFFKREGTWNTEYGDFFLDWYSSKLVEHGEKILVSAKSIFQSSGAKLSAKIAGIHWHYNARSHATELTAGYYNTRFHDGYIPIAQMLAKHGVILNFTCMEMKDNEQPCDANCSPEGLVNQVRMATRIAGGELAGENALERHDSSAYGQVSSTRGLSAFTYLRINKRMLEGENWRQFVDFVVSMSHGGKQRLSEVDSYGTDLYVGHILKENDVIVEIALV	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g00447	541	ProSitePatterns	Beta-amylase active site 1.	168	176	IPR018238	GO:0000272\|GO:0016161
	Tsu05g00447	541	PANTHER	-	1	541	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	SUPERFAMILY	(Trans)glycosidases	85	508	IPR017853	-
	Tsu05g00447	541	Pfam	Glycosyl hydrolase family 14	90	501	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PANTHER	BETA-AMYLASE	1	541	-	-
	Tsu05g00447	541	Gene3D	Glycosidases	79	536	-	-
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	142	160	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	367	383	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	121	135	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	256	278	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	439	461	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	402	425	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	164	185	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	331	350	IPR001554	GO:0000272\|GO:0016161
	Tsu05g00447	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	384	395	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g00447	Tsu-Chr5	3364552	3366974	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g00447	1	541	Glycoside Hydrolase	AT4G17090	68.354	0.0	780

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g00447	K01177		-	gmx:100786079	833.558

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu05g00447	05	3364552	3366974	Tsu05g00447	05	3364552	3366974	ECH