Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00422 atgGCTTCTCAAGTTTTTCTTCAGGCTCTGTTTACTCCTAATAAATCTCTTCCAAACAAGCTATGtttctcttctccttcttcaaCCGCTTCCACATTCGGTTCACGTAACTTACCGTTGATTTCCACTTCAATTTCACGGCGTTACAGTCCTCTCATTGCTAAACCTAATTTCATTGTGAAAGCTGATTCCAATCCCGACGCTGCTTCGGCTTCGGATGAAGTTCCGGAAACTGATAATGAACAGAATTTGGAATCTGATGCTGAAATTGAGCAATTGAAGCCACCTAGACAAACTAGGGTCAAGCTTGGTGATGTTATGGGGATATTGCATAAGAGGGCAATTGCGGCTTCGGATGAAGTGAGGGCCACTCCAGACTTAAGGACTGGTGATATTATTGAAATCAGATTgGAAGTTCCTGAGAACAAGCGTAGGTTATCGATTTATAAAGGTATTGTCATCTCGAAACAAAATGCTGGTATTCACACGACTATTCGCGTCCGACGAATTATTGCTGGCACAGGGGTTGAGATAATCTTCCCAATTTACTCGCCAAACATCAAAGAAATCAAAGTGGTAAAACACCGAAAGGTCAGGCAAGCAAGACTGTACTATCTAAAGAACAAGCTTCCCAGATTCTCCACTTTCAAATGA 654 0.4052 MASQVFLQALFTPNKSLPNKLCFSSPSSTASTFGSRNLPLISTSISRRYSPLIAKPNFIVKADSNPDAASASDEVPETDNEQNLESDAEIEQLKPPRQTRVKLGDVMGILHKRAIAASDEVRATPDLRTGDIIEIRLEVPENKRRLSIYKGIVISKQNAGIHTTIRVRRIIAGTGVEIIFPIYSPNIKEIKVVKHRKVRQARLYYLKNKLPRFSTFK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00422 217 PRINTS Ribosomal protein L19 signature 111 140 IPR001857 GO:0003735|GO:0005840|GO:0006412
Tsu05g00422 217 PRINTS Ribosomal protein L19 signature 170 193 IPR001857 GO:0003735|GO:0005840|GO:0006412
Tsu05g00422 217 PANTHER RIBOSOMAL PROTEIN L19 18 217 IPR001857 GO:0003735|GO:0005840|GO:0006412
Tsu05g00422 217 SUPERFAMILY Translation proteins SH3-like domain 119 217 IPR008991 -
Tsu05g00422 217 MobiDBLite consensus disorder prediction 64 97 - -
Tsu05g00422 217 TIGRFAM rplS_bact: ribosomal protein bL19 122 209 IPR001857 GO:0003735|GO:0005840|GO:0006412
Tsu05g00422 217 PANTHER 50S RIBOSOMAL PROTEIN L19-1, CHLOROPLASTIC-RELATED 18 217 - -
Tsu05g00422 217 Pfam Ribosomal protein L19 121 210 IPR001857 GO:0003735|GO:0005840|GO:0006412
Tsu05g00422 217 Gene3D - 74 215 IPR038657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00422 Tsu-Chr5 3187012 3189538 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00422 K02884 - gmx:100500328 255.758