Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00417 ATGATGCAATTCAGCACCACCGCAGCACCAGCTCATAATCTTCACAAATTTCAAGCACTAAGATGCCCCAGTTTCAGAATCCACTCTTCTTccatcaaacaacaacaacctaattcatcttttgtttcTTCTCAAACTCACAAACCATCAAGGTTACATCTTTCAAACCTTGACAAGTTTCTTGAAAGCCAAAAACCATTGgaaacatcatcaacaaccaCAACCCACTTTCAACAACACCAACAGATACAACAACCGATTCAAAAAAGTGATTCAAAGGACAAAAAAGGTAAGAACTTTCTTCAAGGTCTTAACTTGGCTAAACTATGGCCAGAAATCAAACCAGGAGATGAAATTTCTCCAAGACACCTTAAACGTCTTCAGCGTCTTCTTTCTAAGACGGCGGAGTATTCTCCCAGAAACACCCTTGGCGGTAAGTGGAAGGAATATCACGGCAGCAACGACTGGAAAGGGATGTTAGATCCTCTTGATGATAATCTCCGGCGAGAAGTTGTTCGTTATGGTGACTTAGTCCAAGCTGCTTATCAAGCTTTTCATGCTGATCCTGCCATGTCATCAACTGAACCACCACAGCACCGCCACGTGTCTTTGCCGGAAAGATCTTATAAAGTTACCAAGAGTTTATACGCCACTTCATCGATCGGTTTACCTAAATGGATCGATGAGGTGGCTCCTGATCTTGGTTGGATGACCCAGCGTTCTAGCTGGGTCGGATACGTCGCAGTCTGCGACGATAGAAGAGAGATCGCGAGAATGGGTCGAAGAGACATCGTGATCTCTCTTCGTGGAACTTCAACTTGTCTCGAATGGGCCGAAAACATGAGAGCCCAATTAGTCGACTTATGCGACGATAACAATGAAGCCCAAGCCCAAACAAAGCCCAAAGTGGAGTGTGGGTTCATGagcttatacaaaacaaaagGAGCCCATGTACAAAGCCTATCTGAATCAGTTGTAGAAGAAATCAAACGTCTTATTGAACTTTACAAAGGTGAAGAATTAAGCATAACTGTTACAGGACATAGTCTTGGAGCAACACTAGCACTATTGGTAGCTGAAGAAATCAGCACGTGTGAATCAAACGTGCCACCAGTGGCTGTTTTTTCATTTGGTGGACCTCGTGTAGGTAACAAAGCCTTTGGAGAACATCTTGAAAAGAAGAACGTGAAAGTTCTTAGAGTTGTGAACACACAAGACATGATTACAAGAGTACCAGGAATATTCCTAAGTGAAGAGCTtgaagaaaaattgaagaactcAAAATTGGTTAGTGGTGTTGTTGATATGTTAGAAGAGAACACACCTTTGGGATATTCACATGTTGGAACTGAATTAAGGGTTAATACTAAGATGTCACCTTATTTGAAACCAGATGCTGATATAGCTTGTTGTCATGATTTAGAAGCTTATTTACATTTAGTGGATGGGTATATGGCTTCTAATTGTCCATTTAGAGCTAATGCTAAGAGAAGTTTAGCTAGATTAATGCAAGATCAAAGTGctaatgttaaaaaattgtatACTAGTAAGGCTAAAGGATTGTCTGTTAATCTTAGTAGACAAGGATCATCACTACAAAATCTTAGTAGACAAGGATCCATGTCTATGTCTACTTGTTTACCTAGTCCATCATCTTCATAA 1662 0.3851 MMQFSTTAAPAHNLHKFQALRCPSFRIHSSSIKQQQPNSSFVSSQTHKPSRLHLSNLDKFLESQKPLETSSTTTTHFQQHQQIQQPIQKSDSKDKKGKNFLQGLNLAKLWPEIKPGDEISPRHLKRLQRLLSKTAEYSPRNTLGGKWKEYHGSNDWKGMLDPLDDNLRREVVRYGDLVQAAYQAFHADPAMSSTEPPQHRHVSLPERSYKVTKSLYATSSIGLPKWIDEVAPDLGWMTQRSSWVGYVAVCDDRREIARMGRRDIVISLRGTSTCLEWAENMRAQLVDLCDDNNEAQAQTKPKVECGFMSLYKTKGAHVQSLSESVVEEIKRLIELYKGEELSITVTGHSLGATLALLVAEEISTCESNVPPVAVFSFGGPRVGNKAFGEHLEKKNVKVLRVVNTQDMITRVPGIFLSEELEEKLKNSKLVSGVVDMLEENTPLGYSHVGTELRVNTKMSPYLKPDADIACCHDLEAYLHLVDGYMASNCPFRANAKRSLARLMQDQSANVKKLYTSKAKGLSVNLSRQGSSLQNLSRQGSMSMSTCLPSPSSS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00417 553 Coils Coil 278 298 - -
Tsu05g00417 553 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 2 527 - -
Tsu05g00417 553 SUPERFAMILY alpha/beta-Hydrolases 238 484 IPR029058 -
Tsu05g00417 553 Pfam Lipase (class 3) 265 414 IPR002921 GO:0006629
Tsu05g00417 553 MobiDBLite consensus disorder prediction 532 553 - -
Tsu05g00417 553 MobiDBLite consensus disorder prediction 66 88 - -
Tsu05g00417 553 CDD Lipase_3 200 482 - -
Tsu05g00417 553 MobiDBLite consensus disorder prediction 66 96 - -
Tsu05g00417 553 Gene3D alpha/beta hydrolase 146 532 IPR029058 -
Tsu05g00417 553 PANTHER GLYCEROLIPASE A1 2 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00417 Tsu-Chr5 3168159 3170079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00417 28 553 Acyl Lipid Metabolism Gene Families AT4G16820 55.766 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00417 - - gmx:100806573 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00417 05 3168159 3170079 Tsu01g04665 01 54004822 54010094 PCT