Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00375 ATGAGTACTCCGGAGAAAGGCGAAGATAGAGATATTGTAATAACAAAAAGTGGTAGAAAAGAtgaatcatcttcttcttcttctagtgTTCAGAGATTGAAGTTAAAATCTGGTAGTAGTAGCAAGAAAAAATCACTTCATCCTCCGATCGAGACGCATTGGGATCTTCCTAcacaaaaaggaaagaaaagagcATCATTCTCCATAAAATCAATGTTATCTTATCCACTCATGAAACTTGGAAGGAGTAAAAGTGTTCAAATGATTCTAGAAGGAACTCATGATCcaaatgatgaaaaaattgttgaGAATTTCCGAGAAATGCTTTCTCGTGAGGGTTTATTACCGCCTAAGCACAATGATTATCACACTCTTCTAAgGTTTCTCCGGATGAATGATTTTGATATGACGATTTCCAAAGAGATGTTTCTCAATTATCTCAAATGGCGAAAGGAATTTCGAGTTGACATGATTCATAAGGAATTCAAATTCACAGAATACACAGAAGTGAAGAAATGCTATCCACATGGATACCATGGAGTTGATAGATGTGGAAGACCTGTGTATATTGAGAGAATTGGGATGATAGATATTAACAAATTATGGCAAGTAACCACAAATGAAAGGTTTATAAAGTATCATGTGTCAGAACAAGAGAAAACATTACAAGTAAGATTCCCTGCATGTTCATTAGCAGCTAAAAGACACATAGCTTCCACCACAAGTATCTTGGATGTCAATGGAATAGGAATGTCTAATTTCTCAAAGCCTGCAAGATACATCTTTATGGAAATTCAGAAGATTGATAGCAGTTATTATCCTGAGACTTTAAATAAACTCTTCATTGTTAACGCTGGTTCTGGATTTAAGATGTTGTGGAAAGCGGTGAAGGCATTTTTAGGCGAACGCACAGTAGCGAAAATTCAAGTTTTAGGTTCGAATTATCTCAATGTGTTGCTTGAGGCTATTGATCCAAGTAACTTGCCAACTTTTTTGGGTGGCAATTGCACATGTTCTGATTATGGAGGTTGCTTGATGAGTGATCAAGGTCCATGGAAAAATTCAGAATTGTTAGAAATGATTCAGACAGTTTCTGTAACAGAAGAAATTGATGGTGCGTGCGAATCCAACAATGAGGTTTCAGAAGAATCTTCGATGCACAAAAAGGTTGACATGCAAAACAAAGATGATGTTAGTAGTAGTATGAGTTCGGCACTTGAGGAGACAACATGTGTGAGAACATACTCTTCATGTAGGTTAGGATTACAAAAAATTGATGGGCTTGAAACTAGTCTTGGAGACATCAAGAATAAAATCAAGACATTGGAAGATGCACTTCAAGACACCAAGATGGCATTGAAAGAACTTGCACAACAGatagaacaacaaaaaatgtga 1398 0.3433 MSTPEKGEDRDIVITKSGRKDESSSSSSSVQRLKLKSGSSSKKKSLHPPIETHWDLPTQKGKKRASFSIKSMLSYPLMKLGRSKSVQMILEGTHDPNDEKIVENFREMLSREGLLPPKHNDYHTLLRFLRMNDFDMTISKEMFLNYLKWRKEFRVDMIHKEFKFTEYTEVKKCYPHGYHGVDRCGRPVYIERIGMIDINKLWQVTTNERFIKYHVSEQEKTLQVRFPACSLAAKRHIASTTSILDVNGIGMSNFSKPARYIFMEIQKIDSSYYPETLNKLFIVNAGSGFKMLWKAVKAFLGERTVAKIQVLGSNYLNVLLEAIDPSNLPTFLGGNCTCSDYGGCLMSDQGPWKNSELLEMIQTVSVTEEIDGACESNNEVSEESSMHKKVDMQNKDDVSSSMSSALEETTCVRTYSSCRLGLQKIDGLETSLGDIKNKIKTLEDALQDTKMALKELAQQIEQQKM 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00375 465 CDD SEC14 167 335 IPR001251 -
Tsu05g00375 465 SUPERFAMILY CRAL/TRIO N-terminal domain 92 161 IPR036273 -
Tsu05g00375 465 Gene3D - 154 366 IPR036865 -
Tsu05g00375 465 Gene3D - 77 153 - -
Tsu05g00375 465 PRINTS Cellular retinaldehyde-binding protein signature 124 146 - -
Tsu05g00375 465 PRINTS Cellular retinaldehyde-binding protein signature 326 335 - -
Tsu05g00375 465 PRINTS Cellular retinaldehyde-binding protein signature 293 312 - -
Tsu05g00375 465 SUPERFAMILY CRAL/TRIO domain 166 360 IPR036865 -
Tsu05g00375 465 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 39 463 - -
Tsu05g00375 465 MobiDBLite consensus disorder prediction 1 18 - -
Tsu05g00375 465 Pfam CRAL/TRIO domain 174 334 IPR001251 -
Tsu05g00375 465 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 39 463 - -
Tsu05g00375 465 MobiDBLite consensus disorder prediction 1 59 - -
Tsu05g00375 465 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 166 340 IPR001251 -
Tsu05g00375 465 Coils Coil 425 463 - -
Tsu05g00375 465 SMART CRAL_TRIO_N_2 121 146 IPR011074 -
Tsu05g00375 465 SMART sec14_4 166 337 IPR001251 -
Tsu05g00375 465 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00375 Tsu-Chr5 2794761 2797505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00375 99 331 Acyl Lipid Metabolism Gene Families AT5G47730 28.099 5.47e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00375 - - gmx:100807344 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00375 05 2794761 2797505 Tsu05g00375 05 2794761 2797505 ECH