Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00349 ATGGGTAAGGATCTGAGCGACGATCAAGTTTCTTCAATGAAAGAAGCTTTCACTCTATTCGACACCGACAACGACGGCAAGATCGCACCATCGGAGCTCGGAATCCTCATGCGATCTCTCGGCGGTAACCCGACTCAAGCTCAACTCAAATCAATCGTTGCCGAAGAGAATCTCACATCACCGTTCGATTTCCCTCGGTTTCTAGATCTCATGTCCAAACACATGAAACCTGAACCGTTCGATCGTCAACTTCGTGACGCATTCAAGGTTCTCGATAAGGATTCTTCCGGTTCCGTTTCTGTTAAGGAGCTTCGTCATATTCTCACAAGCATCGGTGAGAAACTCGAGACTTCTGAGTTTGATGAATGGATCAGGGAAGTCGATGTTGGTTCCGATGGGAACATTCGTTACGAGGATTTCATCGCTAGAATGGTTGCTAAGTGA 444 0.4685 MGKDLSDDQVSSMKEAFTLFDTDNDGKIAPSELGILMRSLGGNPTQAQLKSIVAEENLTSPFDFPRFLDLMSKHMKPEPFDRQLRDAFKVLDKDSSGSVSVKELRHILTSIGEKLETSEFDEWIREVDVGSDGNIRYEDFIARMVAK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00349 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Tsu05g00349 147 Pfam EF hand 13 40 IPR002048 GO:0005509
Tsu05g00349 147 Gene3D - 81 144 - -
Tsu05g00349 147 PANTHER - 1 147 - -
Tsu05g00349 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Tsu05g00349 147 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
Tsu05g00349 147 SMART efh_1 119 147 IPR002048 GO:0005509
Tsu05g00349 147 SMART efh_1 83 111 IPR002048 GO:0005509
Tsu05g00349 147 SMART efh_1 12 40 IPR002048 GO:0005509
Tsu05g00349 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Tsu05g00349 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Tsu05g00349 147 Gene3D - 3 80 - -
Tsu05g00349 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Tsu05g00349 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Tsu05g00349 147 CDD EFh 14 109 IPR002048 GO:0005509
Tsu05g00349 147 CDD EFh 83 144 IPR002048 GO:0005509
Tsu05g00349 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00349 Tsu-Chr5 2590101 2591314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00349 1 147 EF-hand Containing Proteins AT1G12310 85.811 3.55e-90 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00349 K13448 - twl:119987543 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00349 05 2590101 2591314 Tsu05g00349 05 2590101 2591314 ECH