Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00341 atggAGTGGCCTGCTTGTACGGATGAATATGAAAAGCTCTTAATAAGGATGAGCACTCCCAGGGTTGTTATTGACAATGCCGTGTGCTCCACTGCAACTCTAGTCAAGGTTATTAGCACAAGAAGACATGGTAGTTTACTTGATGCAATACAAGTTCTCATTGATCTTAATCTTGTAATTAAGAAGGCTTATATATCTTCTGATGGCAAATGGTTCATGGATGTTTTCCATATCACTCATCAAAATGGAAGCAAGTTAATTGAAGAGAGcgttttaaaatatatagaaCAGTCGCTCGGGAGCATTCACAATGTGAAAACTAGTTGCGCAAATGGTCTCACTACGCTTGAATTATCAGGAACCGATAGAATTGGTCTTCTATCGGAGGTGTTTGCGGTTCTTGCTGATCTTCAATGCGATGTGGTTGAGGCTAAGGTTTGGACTCACAATGGTCGCATTGCATCTTTGATATATGTTAAAGACTGCGATTCTGGAACCACTATTGAGGATTCTCAGAAGATTAAAAAGATTGAAGTGCGTTTAAGAAATGTTTTGAAGGGAGACAATGACTTAAGAACTGCAAAGACTTCTGTCTCTATGTCTGTCATGCATACTGAAAGAAGGTTGCATCAAATGATGTTTGCTGATCGTGACTACGAGAGGACTCCCATTCTCAAGCTTAGTTCTGATAACACTGTAGTGACGGTCCAGAATTGGGCAGAAAGGGGCTATTCAGTTGTGAATGTTCAATGCAAGGATCGAATCAAACTATTATTCGATGTCGTATGCAATTTGACAGACATGGAGTATGTTGTGTTTCATGCAACCATCAACACAGATAGTAACGAAGCTTACTTGGAGTTTTATATAAGACACAAGGATGGCACTCCAATTAGTTCAGAACCGGAGCGGCAACGTGTAATTCAATGTTTAAAAGCTTCTGTGGAGAGAAGGGCATCTGAGGGTGTTCAACTAGAGTTATGCACGGAAGACAAAAAGGGACTTCTAGCAGAAGTGATGAGAACCTTCCGCGAGAACGGGCTTAATGTTACAAGGGCTGAGATATCGACTGTAGATAACATGGCAACAAATGTTTTCTATGTAACAGATGTGATTGGAAATCCAGCTGATCCAAAAATCATAGAGTCTGTTCGGCAGAAAATCGGGTCAAAAAATTTAGAAGTGAAGGAGTTACCATTAATATATCATCAGAAGGCAGAAAGAGAGGATCAAGCTGTTGGAGTTGGTGGAGCAGTGTTGTGGTCTATTGGGAACCTTGTGAGAAGAAATTTGTACAGTTTGGGATTAATTAAATCATGTTCTTAA 1326 0.3959 MEWPACTDEYEKLLIRMSTPRVVIDNAVCSTATLVKVISTRRHGSLLDAIQVLIDLNLVIKKAYISSDGKWFMDVFHITHQNGSKLIEESVLKYIEQSLGSIHNVKTSCANGLTTLELSGTDRIGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCDSGTTIEDSQKIKKIEVRLRNVLKGDNDLRTAKTSVSMSVMHTERRLHQMMFADRDYERTPILKLSSDNTVVTVQNWAERGYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHATINTDSNEAYLEFYIRHKDGTPISSEPERQRVIQCLKASVERRASEGVQLELCTEDKKGLLAEVMRTFRENGLNVTRAEISTVDNMATNVFYVTDVIGNPADPKIIESVRQKIGSKNLEVKELPLIYHQKAEREDQAVGVGGAVLWSIGNLVRRNLYSLGLIKSCS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00341 441 CDD ACT_ACR_4 322 389 - -
Tsu05g00341 441 CDD ACT_ACR_3 244 318 - -
Tsu05g00341 441 PANTHER [PROTEIN-PII] URIDYLYLTRANSFERASE-RELATED 1 439 - -
Tsu05g00341 441 Gene3D - 322 392 - -
Tsu05g00341 441 Gene3D - 113 186 - -
Tsu05g00341 441 ProSiteProfiles ACT domain profile. 324 403 IPR002912 -
Tsu05g00341 441 SUPERFAMILY ACT-like 320 389 IPR045865 -
Tsu05g00341 441 Pfam ACT domain 325 375 IPR002912 -
Tsu05g00341 441 Pfam ACT domain 114 164 IPR002912 -
Tsu05g00341 441 ProSiteProfiles ACT domain profile. 115 199 IPR002912 -
Tsu05g00341 441 SUPERFAMILY ACT-like 29 101 IPR045865 -
Tsu05g00341 441 SUPERFAMILY ACT-like 111 172 IPR045865 -
Tsu05g00341 441 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 439 IPR040217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00341 Tsu-Chr5 2515962 2518827 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00341 - - lja:Lj2g3v2002690.1 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00341 05 2515962 2518827 Tsu05g00341 05 2515962 2518827 ECH