Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00340 ATGGAAATGGCTGCTACGCACTACCATTGCTGTTCAAGCTTGGTTTCGCGTTCAGACTCTTCActttgtttggttcaaaatttgaaGCTAACAAACCCTACAAATTCATGGTTAGGAACCAAAATTAGGGTTCAACCGTGCAGTGTAAAACCCGCCATATCCGTTTTCCACCGCCGTCCCTTAGCTGCCACCGTTTCCTGCAGTCTCCCTATCTCaaATCCAGAGCCTGTTTCACCAGGTCAAGAAATTCCCAAATGGTCTGCTTCTGCTATAAAAGCGATTGCAATGGCTTCAGTGGAAGCTAGAAAACTCAAGCGTCTTACTACTGGCACTGAAACCCTTATTTTGGGGGTTCTTCTTGAGGGTACTAATGTGGCTAACAAGTTTTTGCGAGCCAATGGAATTACAATTTTCAAGGTGAAAGATGAAATGGACAAAGTACTTGGAAAAGCTGATATGTTTGCAATAACCGGTGAGCGTCCTCGAACAACTGATGATGCTCAAAGGGCCCTTGATTGGGctgttaataaaaaattaaaatcagGTGAAAGCGGGGAAGTAACCACAGAACACATAATTCTTGGCATTTGGTCTGAAGTGGATTCCGCGGGTCACAAGATACTATCTAACCTTGGCATTAATGAAGAAAAAGTTAAAGAGCTAGAAGCCTTAATTTCTAAATCCGTTGTTATTGATGAATGA 702 0.4074 MEMAATHYHCCSSLVSRSDSSLCLVQNLKLTNPTNSWLGTKIRVQPCSVKPAISVFHRRPLAATVSCSLPISNPEPVSPGQEIPKWSASAIKAIAMASVEARKLKRLTTGTETLILGVLLEGTNVANKFLRANGITIFKVKDEMDKVLGKADMFAITGERPRTTDDAQRALDWAVNKKLKSGESGEVTTEHIILGIWSEVDSAGHKILSNLGINEEKVKELEALISKSVVIDE 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00340 233 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT2, CHLOROPLASTIC 9 233 - -
Tsu05g00340 233 SUPERFAMILY Double Clp-N motif 85 220 IPR036628 -
Tsu05g00340 233 Gene3D - 85 233 IPR036628 -
Tsu05g00340 233 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 9 233 IPR044217 -
Tsu05g00340 233 Pfam Clp amino terminal domain, pathogenicity island component 185 220 IPR004176 -
Tsu05g00340 233 Pfam Clp amino terminal domain, pathogenicity island component 100 149 IPR004176 -
Tsu05g00340 233 ProSiteProfiles Clp repeat (R) domain profile. 83 228 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00340 Tsu-Chr5 2507426 2511090 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00340 - - cam:101488253 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00340 05 2507426 2511090 Tsu05g00340 05 2507426 2511090 ECH