Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00331 ATGAAAGTGATAGTACCTTTGCAAGGAGTAGTTCAACAAGGAGCATGGGGTCTTTTCTTAGGTTCAGTTATTCCATGTGCTCTTTTAtactttcttcaattctattttaAGACACGTCATCGTAACGGCCAcactcctcctcctcctccaacCGATTCCAACAACCACCTTCCGATTCCAAACCTCTCCTCCACCTTGTCACGCTCTCTCTCAACACGAATCAGAGGCTCAACCGCCTCCGCTTATGTCTCCGGTCGGGTTAATTCAATCATCACAGATTCTCCTTATTACGTAGGTTTAAACATGGTTGCAGATAATCCTTATCATCGGATTCATAATCCTGATGGTGTTATTCAGCTTGGTTTGGCCCAAAATACTCTATGTGTGGACTTGATTCAAGAATGGATTCGTCACACTGGAAACGCTGCTATTCTGGAGACACAATCAAATTGCGGTTGCCTCAGTATTACTGACCTTGCTACTTACCATGGATTCATGGACTTCGAAGTGGTTGTGGCTGGTTTCATGTCTCAAGTTTTGGAAAAACCAGTTTTCTTCAACCCCTCACATATGGTGCTAACTGCAGGTGCCATCTCTGCAATTGAAATTCTAAGCTTCTGCCTTGCAGATAATGGAAATGCATTCCTTGTTCCGACGCCTCATAGTCCTGGCTTTGATGAGGCCGTAAAATGGAGAACTGGGGTGGATATAGTATATGTTCCATGTCGCAGTGCTGACGACTTCAACCTAAGCATAACTGCACTTGACCAAGCCTTCAACCAAGCGAAGAAACGTAGTCAAAAAGTTCGTGGAGTTATAATATCAAACCCTTCAAACCCTGCTGGCAAATTGTTAAATCGAGAAACACTACTTGATCTTCTGGACTTTGCTAGAGAGAAGAACATTCATATAATCTCTAATGAAATATTTGCTGGCTCTGCTTATAGAAACGAAGAGTTTGTGAGCATGGCAGAAATCATGGAAGCAGAAGATCATGATCGGGACAGAGTTCACATAGTGTTTGATTTAGCAAATGAGCTATATGTTCCAAGTTTTAATGTGGGAGTTATCCACTCCTATAATGAGAATGTCGTGGCTGCTTCCAAAAAATTGGCGAAATTCTCACCTGTTTCAGCTCCAACTCAGCAATTGCTTATCACAATGATTTCAGATACAGGGTTTATTCAAGAACTCATAAAGACTAACAAATTGAGGCTGCAGAAAATGCATAGTGCATTTGTGGCAGGATTAGAGCAGTTGGGCATTGAGTGCACCAAAAGCAGTGGTGGTTTTTGCTGCTGGGCTGACATGAGTAAATTCATCCGATCTTACAACGAAAAGGGGGAACTTGAGCTTTGGGATAGATTACTGAATCTAGCTAAGATCAATGTTACCCCAGGTTCCTCTTGTCACTCTATTGAACCTGGATGGTTCCGTTTTTGTTTCACTACATTGACTGAAAAGGATATACCTGTAGTAATGGAACGGATCGGGAGAATTTCTGAGACTACAAGTTGA 1518 0.4097 MKVIVPLQGVVQQGAWGLFLGSVIPCALLYFLQFYFKTRHRNGHTPPPPPTDSNNHLPIPNLSSTLSRSLSTRIRGSTASAYVSGRVNSIITDSPYYVGLNMVADNPYHRIHNPDGVIQLGLAQNTLCVDLIQEWIRHTGNAAILETQSNCGCLSITDLATYHGFMDFEVVVAGFMSQVLEKPVFFNPSHMVLTAGAISAIEILSFCLADNGNAFLVPTPHSPGFDEAVKWRTGVDIVYVPCRSADDFNLSITALDQAFNQAKKRSQKVRGVIISNPSNPAGKLLNRETLLDLLDFAREKNIHIISNEIFAGSAYRNEEFVSMAEIMEAEDHDRDRVHIVFDLANELYVPSFNVGVIHSYNENVVAASKKLAKFSPVSAPTQQLLITMISDTGFIQELIKTNKLRLQKMHSAFVAGLEQLGIECTKSSGGFCCWADMSKFIRSYNEKGELELWDRLLNLAKINVTPGSSCHSIEPGWFRFCFTTLTEKDIPVVMERIGRISETTS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00331 505 CDD AAT_like 184 499 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 153 169 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 190 210 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 336 360 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 266 290 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 212 233 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 368 391 - -
Tsu05g00331 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 146 - -
Tsu05g00331 505 Gene3D - 140 391 IPR015421 GO:0003824
Tsu05g00331 505 SUPERFAMILY PLP-dependent transferases 86 500 IPR015424 -
Tsu05g00331 505 Gene3D Aspartate Aminotransferase, domain 1 106 496 IPR015422 GO:0003824
Tsu05g00331 505 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 503 - -
Tsu05g00331 505 Pfam Aminotransferase class I and II 119 497 IPR004839 GO:0009058|GO:0030170
Tsu05g00331 505 PANTHER AMINOTRANSFERASE ACS12-RELATED 2 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00331 Tsu-Chr5 2443624 2446614 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00331 K14270 - gmx:100783490 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00331 05 2443624 2446614 Tsu05g00331 05 2443624 2446614 ECH