Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00313 ATGGCAGCAAAGAATGTTGGAATTCTCGCTCTTGATATCTACTTCCCTCCTAATGCTGTTCAACAGGAAGCATTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACTATTGGACTTGGACAAGATTGCATGTCATTTTGTTCAGATGTAGAAGATGTCATTTCAATGAGTTTGACAGTGGTTTCTACCCTTCTTGAGAAGTATGGGATCGATCCTAAACAAATTGGTCGTCTTGAAGTAGGCAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAGACATTCTTGATGCAGATCTTTGAGAAACATGGAAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCCGCTTTGTTCAACTGTGTCAACTGGGTGGAGAGCAATTCATGGGATGGGCGCTATGGACTTGTTGTCTGCACCGACAGTGCAGTCTATGCTGAAGGTCCTGCTCGACCTACCGGAGGAGCTGCTGCTATTGCTATGCTAATTGGTCCTGATGCTCCTATTTCTTTTGAAAGCAAATTGAGGGGAAGTCACATGTCTCATGTTTATGATTTTTACAAACCTGACCTTGCTAGTGAATATCCGgTTGTCGACGGAAAGCTTTCACAAACATGTTACCTCATGGCTCTTGATACTTGCTATAAAAATTTCTGTCAAAAATATGAGAAACACGAGGGAAAACCATTTGCTCTTTCTGATGCTGATTACTTTGTATTCCACTCTCCTTATAACAAGCTTGTGCAAAAAAGTTTTGCTCGTCTGGTCTTCAGTGACTTCTTGAGGAATCCCAGCTCTAAGGATGAGGTTACCAAAGAAAAGCTAGGACCTTTTGCAACTTTATCGGATGACGAGAGCTACCAAAGCCGGGATCTTGAAAAGgcATCCCAGCAAGTTGCAAAGCCTCTATACGATGAGAAGGTACAACCATCTACTTTGATACCAAAGCAAGTTGGCAACATGTACACCGCGTCCATCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCTCATTGGAAGGGAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTGACTTCCACAATGTTTTCCTTGCAATTACGTGAAACTAAACATCCGTTTAGCTTGTCAAACATTGCCCAAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGACAAGAGTTCCCACCAGAGAAGTTTATTGAAACACTGAAGCTAATGGAACATAGGTATGGTGCCAAGGATTATGTAACAAGCAAGGACAGTAGCCTTTTAGCTCCAGGCACATTCTATCTCACCGAAGTTGATACCATGTATCGTAGATTCTATGCAACGAAATCTAGTGAAAGCAATTCGACTCATGCAGTCAACGGTGTGATTTCCAATGGTCATTGA 1407 0.4179 MAAKNVGILALDIYFPPNAVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVSTLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCYKNFCQKYEKHEGKPFALSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTKEKLGPFATLSDDESYQSRDLEKASQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLIHNKHSSLEGKRVILFSYGSGLTSTMFSLQLRETKHPFSLSNIAQVMDVAEKLKSRQEFPPEKFIETLKLMEHRYGAKDYVTSKDSSLLAPGTFYLTEVDTMYRRFYATKSSESNSTHAVNGVISNGH 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00313 468 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 175 IPR013528 -
Tsu05g00313 468 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 456 - -
Tsu05g00313 468 SUPERFAMILY Thiolase-like 5 173 IPR016039 GO:0016746
Tsu05g00313 468 Gene3D - 1 451 IPR016039 GO:0016746
Tsu05g00313 468 SUPERFAMILY Thiolase-like 177 448 IPR016039 GO:0016746
Tsu05g00313 468 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 106 121 IPR000590 GO:0004421|GO:0008299
Tsu05g00313 468 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 176 450 IPR013746 GO:0004421|GO:0006084|GO:0010142
Tsu05g00313 468 CDD init_cond_enzymes 5 369 - -
Tsu05g00313 468 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 3 450 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00313 Tsu-Chr5 2339779 2345210 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00313 K01641 - gmx:100782595 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00313 05 2339779 2345210 Tsu05g00313 05 2339779 2345210 ECH