Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00312 ATGGGTGGTTGGTTTTGGAGACTAATTCTTCTTTCTCTTGCTGGAATTATCTTCTCTCCTAAACATTGTGTATCTCAAAAAGAAACAGGTAGCAAATACAAGTTTATGCATGATGCAACTTCAGCACCAAGAACATCCTACTATGACTACATCATAATTGGCGGCGGCACCGCAGGGTGTCCGTTGGCTGCGACACTGTCTCAAAATCACAATGTTTTGTTGCTTGAGCGTGGTGGATCACCTTATGAGAACCCAAACATAACAAATTTAAGTGCATTTGGTGTTCCACTATCTGATACCTCTCCTTCCTCTCCTGCTCAACGATTTATTTCTGAAGATGGTGTCATCAATTCAAGAGCTCGTGTTCTTGGTGGTGGAAGCTGCTTGAATGCTGGATTCTATACTCGTGCAAGCCATCGCTACATAAGAGAAGCTGGTTGGGAAGGAAAGTTGGTGAATGAATCATATAAATGGGTGGAGAGAGTGGTGGTGTTCCGGCCTCCTGTGCTGCAATTTCAATCAGCAGTTAGGGATGGATTGTTGGAAGTTGGGGTATTGCCTTTCAATGGCCATacttttgatcatatttttggGACTAAGGTTGGAGGTACAATCTTTGATCAAAATGGTCATAGACACACTGCAGCTGATCTTTTGAAATATGCTAACTCCAATGGAATTACTCTTCTTTTGCATGCCACTGTTTATAGGATCTTGTTTACAACAAACAAAGGGAGATCAAATTCAAGACCAGTTGCATATGGAGTTGTATTCAAGGATTCACGTGGGTTAGAACATAGGGCATATCTGAGACAGGGGACTAGGAATGAGATCATAGTTTCAGCTGGTGCACTAGGTAGCCCACAACTTCTAATGTTGAGTGGAATTGGACCAGCACATCATCTTAGGGGACACAACATTGGTGTAGTATTGGATCAGCCTTTGGTAGGACGGGGAATGAAAGATAATCCAATGAACGCTGTTTTTGTCCCGTCTCCTACTTCCGTAGAAGTCTCCCTCATCCAAGTCGTTGGTATTACCCACTTCGGCAGCTACATTGAAGCCGCTAGCGGTGAAAACTTCAACCGTGGTTCTCAACAAGACTTTGGAATGTTTTCTCCGAAGATTGGTCAATTTTCAAAGTTGCCACCAAAGCAAAGGACCCCAGAAGCCATAGCAAAAGCAATAGAAAAGATGGAGAGCCTAGAAGAAGCTGCTTTCAAGGGTGGATTCATtctagaaaaaataaatggcCCAATTTCAATGGGTCATTTGGAACTTAGAAACACTGATCCAAATGAAAACCCTTTAGTAACATTTAACTATTTCCAAGACCCAAGAGACTTGGAAAAATGCATACAAGGCATTAgaatcattgaaaaaataattgaatcaaAGGCTTTTTCTCCATTTAAATACAATAATATGTCAGCTTCAAGTCTACTTAACATGACTGCAAATTCACCAGTAAATGTATTGCCTAAACACACAAAAACTTCAATTTCTTTGGAACAATTTTGTAGAGACACTGTGATGACTATATGGCATTATCATGGTGGTTGCCAAGTTGGTAGGGTTGTCGATCGCGATTATAAGGTTCTTGGCGTCGATGCATTGCGTGTAATCGACGGTTCTACTTTTAATTATTCTCCTGGAACTAATCCTCAAGCTACTGTTATGATGCTTGGAAGGTATATGGGAGTTAAAATATTGCAGGAGAGGCTTGTTGCTGatgaaactaaataa 1746 0.3986 MGGWFWRLILLSLAGIIFSPKHCVSQKETGSKYKFMHDATSAPRTSYYDYIIIGGGTAGCPLAATLSQNHNVLLLERGGSPYENPNITNLSAFGVPLSDTSPSSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASHRYIREAGWEGKLVNESYKWVERVVVFRPPVLQFQSAVRDGLLEVGVLPFNGHTFDHIFGTKVGGTIFDQNGHRHTAADLLKYANSNGITLLLHATVYRILFTTNKGRSNSRPVAYGVVFKDSRGLEHRAYLRQGTRNEIIVSAGALGSPQLLMLSGIGPAHHLRGHNIGVVLDQPLVGRGMKDNPMNAVFVPSPTSVEVSLIQVVGITHFGSYIEAASGENFNRGSQQDFGMFSPKIGQFSKLPPKQRTPEAIAKAIEKMESLEEAAFKGGFILEKINGPISMGHLELRNTDPNENPLVTFNYFQDPRDLEKCIQGIRIIEKIIESKAFSPFKYNNMSASSLLNMTANSPVNVLPKHTKTSISLEQFCRDTVMTIWHYHGGCQVGRVVDRDYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGVKILQERLVADETK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00312 581 ProSitePatterns GMC oxidoreductases signature 2. 283 297 IPR000172 GO:0016614|GO:0050660
Tsu05g00312 581 Pfam GMC oxidoreductase 48 324 IPR000172 GO:0016614|GO:0050660
Tsu05g00312 581 Pfam GMC oxidoreductase 419 564 IPR007867 GO:0016614
Tsu05g00312 581 PANTHER OSJNBA0019K04.7 PROTEIN 18 575 - -
Tsu05g00312 581 Gene3D - 48 563 IPR036188 -
Tsu05g00312 581 Gene3D - 165 513 - -
Tsu05g00312 581 PIRSF Alcohol_oxidase 24 580 IPR012132 GO:0050660
Tsu05g00312 581 SUPERFAMILY FAD-linked reductases, C-terminal domain 320 520 - -
Tsu05g00312 581 SUPERFAMILY FAD/NAD(P)-binding domain 42 573 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00312 Tsu-Chr5 2328256 2332437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00312 4 579 Miscellaneous Gene Families AT5G51950 57.487 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00312 - - gmx:100796752 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00312 05 2328256 2332437 Tsu05g00312 05 2328256 2332437 ECH