Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00311 ATGAGCAAGAAGTATAGGACAGGTTTTGGGGAAAAaTTTTGGCTAAATTTTTTTGGGAGTGAAATTAGTTCTTTCTGGCGGAGTTTTACGTCTAGGTCCTTCCTACGAAGAACCTTCTGTAGCGCAGCTTATCATTGCGCCGGAGGTTTTGAAGGTCTGCTTGAAATTTTATGTGGAGTGCAAGAAGATATAGAGAAGATCTCCACCTTGGAGATAAATGCACCTGGACAGGTCACTTGTTCTGATCTGGGACTTCCAAATTCGTCTTATGCGTGCACGACATGTGGTTCAAACGATAGAAAGTCCTGTGATGGTCACTTTGGATCAATCAAATTTCCTTTTACCATATTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGCAAAAGATTTGCCCTGCATGTAAATCTATTCGACATGAATTACGGATCAAGCGTGCTAAATCACTCCTTGGATTCAATAATCAGCCCAGAGGTTGCAAATATtgttgtGGTAATGGTATGGGTCGTTATCCCGCCATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATTATTGTTGAAGTAAATGATATATCTTTAAATAAGAAGAGAAATTTGGGGCGAGGATTGCCAGCTGATTATTGGGATTTCATCCTTGGAGATGCTCAACAAGATGAAAACCATGTAAATAGAAAGGTTTTATCACCTGTTCAGGTTGAGAATTTGTTGAGTGGTGTTGATCCGAACTTCATTGAAAAATTTATTCCAAGCATGGATTTGGTTGGTCTCAATTGCTTCCTTGTGGCACCGAATTGTCATCGTGTGACAGAAGTTGCTCACCGACTTTGCGGGGGATATCCATTGAGTTTTGATAACAGGACCAGAGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGTTTTCCAAGATAAATCCTGATAGAACACCAATCAATATTTTTACTGAGTTGCAACAAAGAAGGGTTGGAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATGAAAGATGTTGTTCTTGGAAAACGTAATGACTGTTCATTCCGTACTGTGGTTGTCGGTGATCCAGACCTTGAGCTTTGTGAAATTGGTATACCGTGTCAAATTGCAGAAGGTTTGCAAGTTTCTGAGTGCGTGAATAGGCagaataaacaaaatttactttATTGTTGTGAGCTACGTTTGTTAGAGAAGGGGCAGATAAATGTTCGCAGGAAAGGTAATCCAGTTGTTTTGTATAAGAAAGAAGATTTACAGATAGGAGACATATTTTATCGGCCTCTTGTTGATGGAGACACGGTGTTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCTTTCACAGTTAGAGTTCTTCCAATTACTTCTGTAGTTTCTATTAACCCACTCTGCTGTTCACCTCTTTGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCTGTTGGTGCAAGAGTGGAGCTTAATGAGCTGGTTGCTTTGGATAAGCAACTGATTAATGGGCAAAGTGGTACAAATCTGCTTTCACTTTGTCAGGATAGTTTAACTGCCGCATATTTGCTGTTGGAAGACGGGGTCCGTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGCTTTGCGATAGAAAATTAACACCTCCTGCAATCATAAAAGCTTCTTCAAGCAATACCTCGTTTTGGAGTGGGAAACAATTGTTCAGCATGCTATTGCCTTCTAATTTTGGCTATGATTTTCCTTCAAGTGATGTTTTTGTTAGGGACGGGGAACTGATATCTTGTTCTGAGGCTTCTGGGTGGTTACGTGATTCAAAGAATAATATTTTCCAAAGTCTCGTGGAACATTTTCAAGGGAAAACTTTGGATATATTGCATGGTGCACAGaaaactctttgtgagtggttGTCTATGACAGGGTTCAGTGTTTCCCTCTCAGATTTGTACCTTTCTTCCGATTCATATGCACGGAAAAACATGATGGAGGAAATCTCATATGGCTTACGAGAAGCAGAAAAGGCTTgtaatttcaatcaattattgGTAGATTATTATTGTGATTTTCTTTCAAGAAGTCTAGAAGAGAATGAAAAATTTCTGACTGTGGACGTAGATCGTCTTAATTATGAAAGACAATTATCTGCTGCCATAAGTCAAGCTTCGGTTGATGCTTTTAGACAAGTATTTCGCAATATTCAGAGTTTAGCAGATAAATATGCATGCAAGGACAATACTTTCCTTACTATGTTTAAGGCTGGAAGCAAGGGTAATTTACTGAAATTAGTGCAACATTCCATGTGCCTTGGGCTGCAACATTCTCTGGGATATGACTCTTTAAGAAAAGACTCAAAATTCACTCTTCCCAATTTGAAAATATCAAGCAAGAAATGTTGTGTAGATGACATGGCTAAGGAAGGTGGAGAAGCATTTGATAATGAAAAAGACAGCCAAGATTGCATCACCGTAACAATTGTTGAAGATTGTAAGAATTCTCTACAACTGGATGCTGTTCGCAATATAATGATACCTATGCTTCTGCGAACAGCTATAAAAGGATTTTCGGAGATAAAGAAGGTTGACATTCTCTGGAAGGATCGGTCAAAAGTATCGAATTCTTATAATGGTTCGTCTGGTGAACTTTACTTGAGGGTTACTATGGCCAGCGAAAATGACAGCGGTACATTCTGGGGTTCACTCATAAATCATTGTCATAGAATAATGCCGTTGATTGACTGGACACGAAGTCATCCCGATAACATTCACCATTTCTGCTCAGCCTTTGGAATCGATGCAGGGTGGCAGCATTATCTGCATAATCTATCATCTGCAACATCTGATACCGGCAAGTCGATCCTTCCTAAGCATCTGCGTCTTGTTGCCAATAGTCTGTCAGCTAGTGGAGAGTTTGTTGGATTAAATGCTAAAGGCATGGCACGGCAAAGAAAACATGCATCTGTTTCATCGCCCTTCGTGCAAGCGTGCTTTTCTAATCCTGGCAGTTCCTTTTTAAAAGCTGCGAAGTCCGGAGTCAAGGATAATCTCCAAGGCAATCTAGATGCATTGGCTTGGGGAAACTGTCTGCCCATGGGTACAAGTGGACAGTTTGATATCATATACTCAGAGAAGGTCCAAGAGCTTGATAAGTCTGTAGATGTGTATGGCCTGCTAGAAACCAGTTTTGACCAAATGGACCAAGAGATCAGTACCCCTCAATCTCAGAAATATTCATTTGGCAACTGCAATTCAGACTTTAAGTATAAAAAAGGTGGTTACACTCGGAAAGAGCCTAAGCAGTGGAAAAACGCTGTAAGAAGTTTCATAACTGTCAATGATATTCGGAAGCTTACTACTGCATCAAGGTTCATACTGAACAAGTATCAAATTGATGAGATACTTAGTGAGAAGGACAAGTCGACCATAATGAAGGTTTTGCATTTTCATCCATGTAAAAATGAGAAGTTTGGCTCAGGACCACAAGACATAAAGGTTGGATGGCATCCCAAGTTTACGGATAGCCGTTGTTTTTTTGTAATACGAAAGGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATTGTTGATCCGGAAAAGGCAAAGATCCAAAAGAATAAATGGTCTGGAAATATTGACATGGAATCTAAAAAATGGTCTGGAAGTGATGACATGGAAGTGAAAAAATGGTCGGAAAATTATGACATAGAAACTAAAAAATGGTCAAGAAATTATGACAAGGAAGCTAAAAAATGGCCAGCCAATGATGACATAGAAGTGACTGGCATTTGA 3870 0.3904 MSKKYRTGFGEKFWLNFFGSEISSFWRSFTSRSFLRRTFCSAAYHCAGGFEGLLEILCGVQEDIEKISTLEINAPGQVTCSDLGLPNSSYACTTCGSNDRKSCDGHFGSIKFPFTILHPYFMAEIAEILQKICPACKSIRHELRIKRAKSLLGFNNQPRGCKYCCGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYWDFILGDAQQDENHVNRKVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLNCFLVAPNCHRVTEVAHRLCGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPINIFTELQQRRVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLELCEIGIPCQIAEGLQVSECVNRQNKQNLLYCCELRLLEKGQINVRRKGNPVVLYKKEDLQIGDIFYRPLVDGDTVLINRPPSIHQHSMIAFTVRVLPITSVVSINPLCCSPLCGDFDGDCLHGYIPQSVGARVELNELVALDKQLINGQSGTNLLSLCQDSLTAAYLLLEDGVRLNVYQMQQLQMLCDRKLTPPAIIKASSSNTSFWSGKQLFSMLLPSNFGYDFPSSDVFVRDGELISCSEASGWLRDSKNNIFQSLVEHFQGKTLDILHGAQKTLCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLREAEKACNFNQLLVDYYCDFLSRSLEENEKFLTVDVDRLNYERQLSAAISQASVDAFRQVFRNIQSLADKYACKDNTFLTMFKAGSKGNLLKLVQHSMCLGLQHSLGYDSLRKDSKFTLPNLKISSKKCCVDDMAKEGGEAFDNEKDSQDCITVTIVEDCKNSLQLDAVRNIMIPMLLRTAIKGFSEIKKVDILWKDRSKVSNSYNGSSGELYLRVTMASENDSGTFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYLHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGVKDNLQGNLDALAWGNCLPMGTSGQFDIIYSEKVQELDKSVDVYGLLETSFDQMDQEISTPQSQKYSFGNCNSDFKYKKGGYTRKEPKQWKNAVRSFITVNDIRKLTTASRFILNKYQIDEILSEKDKSTIMKVLHFHPCKNEKFGSGPQDIKVGWHPKFTDSRCFFVIRKDGTVEDFSYRKCILGALDIVDPEKAKIQKNKWSGNIDMESKKWSGSDDMEVKKWSENYDIETKKWSRNYDKEAKKWPANDDIEVTGI 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00311 1289 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 62 1063 - -
Tsu05g00311 1289 Gene3D RNA polymerase Rpb1, domain 3 526 667 IPR042102 -
Tsu05g00311 1289 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 796 1133 - -
Tsu05g00311 1289 Gene3D RNA polymerase ii 392 444 - -
Tsu05g00311 1289 Pfam Protein of unknown function (DUF3223) 1144 1215 - -
Tsu05g00311 1289 Pfam RNA polymerase Rpb1, domain 3 522 670 IPR007066 GO:0003677|GO:0003899|GO:0006351
Tsu05g00311 1289 SMART rpolaneu7 258 546 IPR006592 GO:0003677|GO:0003899|GO:0006351
Tsu05g00311 1289 Gene3D RNA polymerase II, clamp domain 59 157 IPR044893 -
Tsu05g00311 1289 CDD RNAP_IV_RPD1_N 61 803 IPR040403 -
Tsu05g00311 1289 Pfam RNA polymerase Rpb1, domain 4 737 812 IPR007083 GO:0003677|GO:0003899|GO:0006351
Tsu05g00311 1289 PANTHER DNA-DIRECTED RNA POLYMERASE 61 798 IPR045867 GO:0003899|GO:0006351
Tsu05g00311 1289 Gene3D - 668 822 IPR038120 -
Tsu05g00311 1289 Gene3D - 1125 1217 - -
Tsu05g00311 1289 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 61 798 - -
Tsu05g00311 1289 Gene3D - 355 525 - -
Tsu05g00311 1289 Pfam RNA polymerase Rpb1, domain 2 359 516 IPR000722 GO:0003677|GO:0003899|GO:0006351
Tsu05g00311 1289 PANTHER DNA-DIRECTED RNA POLYMERASE 796 1133 IPR045867 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00311 Tsu-Chr5 2311718 2324991 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00311 K16250 - cpap:110817539 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00311 05 2311718 2324991 Tsu05g00311 05 2311718 2324991 ECH