Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00310 ATGATGAGAGGTTCAAAGCGTTTGGCTGTATCGGAACCAAACCAAGCTAATAACAACGAAACGACATTTCGGAATAAAAGAATAATGGAAGGATCTCTCTTTGATGCCCATAGGGCTGAACCATCCCAACAACTGATGGGGGAAACACCCCAATTGGATATGAAACGAGCAGAGTCATCCCAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGCTGGGTTCAAACACAATTGAAGAATCATCCTGATGAGCTTTGGGAAGATGGTGTCAGAGATTACTTAGATCATGCTACAAGCATAATGGAAAAATTTAGTGATGTTGTCAACTGGCTCAAAGCAAATGCCACAAAGGCAGAAAATTCTACTCATGGTGCTGGTATCGGTGCTTCTTTTGGTGTGAAAAAGTTTTTGCCTGAAGtaacaaacaaagaaaataaaatttttggaGAAAAAACTGGATCTCCTCCTGTTAGTGCTGCTACAAATTTTGCTACCAAGACAGAAAATTCTACTGCTGGTGCTGGTGCTGGTGCTTCTTTTGCTGGGAATAAGTTTTTGCCTGAAGTAACAAgcacacaaaataaaatttttggaGAAAAAACTGGATCTCCTCCTGTTAGTAGTGCTACGAATTTTGCTAGTTCGTGGAGCCCTGGCATATTTTCAAACAATCAAAACCCTTTTACATTTGgAGGGAACAGCGCTTCAGGAAATCAAAGTTCAGCCCCCTCCAACTCCAATCACAATGCTTcagatgatgtggatgctgAAAATGAGGAAGAGCAGCCGAGCAGCCCATCAGTGAAGAAGTCAGAAGAGAAAGGTGTAGTAGTTGTGCATGAAGTGAAGTGCAAGCTTTATGTAAAGTCAACTGACCCAACAGATAAGGATGTATGGAAAGATAAAGGAATGGGACATCTGTCCATTAAATGCAAAGAGGGGGTTGCCAAGGCTACCAAAGAGTCCAAACCTACAATTATTGTTCGAAATGAGGTGGGAAAAATTCTTCTCAATGCCTTGTTGTATCATGGAATCAAGACAAATCCACAGAAGAATTCTCTTGTTGCGATATTTCATACTTCGGGTAATGCTGATGGTAGTGGTGGAGATAATGATAGTGTTGTTGCACGTACATTTTTGATTCGGATGAAAACAGAAGATGATCGAAATAAACTGGCTTCAACTATTCAAGAATATGCTCCGGCATCTTGA 1215 0.3901 MMRGSKRLAVSEPNQANNNETTFRNKRIMEGSLFDAHRAEPSQQLMGETPQLDMKRAESSQQHVRALNTQFASWVQTQLKNHPDELWEDGVRDYLDHATSIMEKFSDVVNWLKANATKAENSTHGAGIGASFGVKKFLPEVTNKENKIFGEKTGSPPVSAATNFATKTENSTAGAGAGASFAGNKFLPEVTSTQNKIFGEKTGSPPVSSATNFASSWSPGIFSNNQNPFTFGGNSASGNQSSAPSNSNHNASDDVDAENEEEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPTDKDVWKDKGMGHLSIKCKEGVAKATKESKPTIIVRNEVGKILLNALLYHGIKTNPQKNSLVAIFHTSGNADGSGGDNDSVVARTFLIRMKTEDDRNKLASTIQEYAPAS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00310 404 Gene3D - 192 403 IPR011993 -
Tsu05g00310 404 MobiDBLite consensus disorder prediction 225 252 - -
Tsu05g00310 404 PANTHER RAN BINDING PROTEIN 5 403 IPR045255 -
Tsu05g00310 404 CDD RanBD_NUP50 273 401 - -
Tsu05g00310 404 MobiDBLite consensus disorder prediction 1 21 - -
Tsu05g00310 404 MobiDBLite consensus disorder prediction 225 274 - -
Tsu05g00310 404 Pfam RanBP1 domain 269 399 IPR000156 GO:0046907
Tsu05g00310 404 SUPERFAMILY PH domain-like 271 401 - -
Tsu05g00310 404 SMART ranbd_3 261 400 IPR000156 GO:0046907
Tsu05g00310 404 ProSiteProfiles Ran binding domain type 1 profile. 271 404 IPR000156 GO:0046907
Tsu05g00310 404 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP50 5 403 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00310 K14295 - gmx:100816975 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00310 05 2301104 2307202 Tsu05g00310 05 2301104 2307202 ECH