Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00274 ATGTTAAGAGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATTGCATGTTATCAATGTAATGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACTCAAGATATCTACATTTGCCCTGCGTGTAACCCGTGTACAGGATTGGCTACTAACCATGACAGATTAACTAGTGGGAAACTTGAGGAGCCTAAAACACCTTCTCCCAGGCATACAAACCCTAGAAAGAAGCAGAAGATAGATATGTTTGCATCCAGGAATGAAGATGGTAGTGATTTTAGGTATTCAAATGGGACAAAATGTCTAAGATGGAAAAATCGAAAACCGTTTAGAAGACTCGAACCCAGCTTTACATTATTTATTGATACAAGAATGAGGTACGTGAAACCCTTGGAGATGTTTCATGATTTGCTGAAAACAACACAGAAAGAACGCGGAAGGTTGATGGGTTTAGATGTCGGTGATAAATATGTCGGTCTTTCTCTTTCTGATTTCGATAACAAAATTGCTTCACCATTTAGTGTTCTCGTCAGGAAGAAGAATAATGCTGATTTAATGGCTGCTGATTTTAAGAGTCTGATCTCTAAATATTCCTTGAAGGGCTTTGTTATTGGCGTTCCTTATAGCTGGCATCAAGTGTCTTCTGATgCTGCTCAAGTGAATGTCTTCATTGATAACCTTCATAGAACAAACATGCTTGAAGGTTTAAACTATACATGCTGGAATGAGAGCTTCTCGTCAAAGAGTGTAGACTTGATAGTAAAGTCTTTGAACTTGAAACATCCAGTTCATTCCAAAACTATGCTAGACAAGTTTGCTGCTGTAGGGATACTTCAGGGGTATCTGGACTATGCTAGCAAAAGAACAAAGCTGATAAAACTGGAGTAA 909 0.385 MLRARCMLYCICRKPFDPGRMIACYQCNEWYHFDCMKLSCTQDIYICPACNPCTGLATNHDRLTSGKLEEPKTPSPRHTNPRKKQKIDMFASRNEDGSDFRYSNGTKCLRWKNRKPFRRLEPSFTLFIDTRMRYVKPLEMFHDLLKTTQKERGRLMGLDVGDKYVGLSLSDFDNKIASPFSVLVRKKNNADLMAADFKSLISKYSLKGFVIGVPYSWHQVSSDAAQVNVFIDNLHRTNMLEGLNYTCWNESFSSKSVDLIVKSLNLKHPVHSKTMLDKFAAVGILQGYLDYASKRTKLIKLE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00274 302 CDD YqgF 155 290 IPR005227 GO:0006364
Tsu05g00274 302 SUPERFAMILY Ribonuclease H-like 153 292 IPR012337 -
Tsu05g00274 302 Hamap Putative pre-16S rRNA nuclease [yqgF]. 153 293 IPR005227 GO:0006364
Tsu05g00274 302 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 132 296 IPR005227 GO:0006364
Tsu05g00274 302 MobiDBLite consensus disorder prediction 64 88 - -
Tsu05g00274 302 SMART PHD_3 9 51 IPR001965 -
Tsu05g00274 302 Pfam Holliday junction resolvase 154 290 IPR005227 GO:0006364
Tsu05g00274 302 SUPERFAMILY FYVE/PHD zinc finger 5 55 IPR011011 -
Tsu05g00274 302 ProSitePatterns Zinc finger PHD-type signature. 10 50 IPR019786 -
Tsu05g00274 302 Gene3D Cupin 4 114 - -
Tsu05g00274 302 SMART rnase_8s 153 257 IPR006641 GO:0006139
Tsu05g00274 302 Gene3D - 153 299 IPR037027 GO:0006139
Tsu05g00274 302 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 132 296 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00274 - - lja:Lj0g3v0306549.1 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00274 05 2036352 2041179 Tsu05g00274 05 2036352 2041179 ECH