Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00268 ATGGTTAATCGACGCTTCACTCAGGTAGCCACCAGCGACGAAGATGAAGACGAAgcaccaccacaaccaccaccaTCTCAGCGGAATTCGAAGCTACGCAAACGGAAAAGAATGAAGCTTCtagacgaagaagaagaagacagcgataacaataacaataacgATAGCGACGATGACGATGAGAAGgaagaagggaaaaaagaaCAGCCGCAGACTCCAGATGATGCAAAACCAATTGGTGATCCAATTAGGGTTTCGGGAAAAGGAAGAGGGAGGAAGAGACATTACGAATCATTCGAATTCGATGGAAATCAATATTCTCTCgaaGATCCTGTAATGCTTGTGCCTGAAGATAAAGAACAAAAACCATATGTTGCTATAATCAAGGATATTATACAGTACTTTAGTGGTAGCATAATGGTAGCGGGACAGTGGTTTTATCGTCCTGAAGAAGCTGAAAAAAAAGGTGGTGGAAGTTGGAAGTCGTGTGATACAAGGGAGCTTTTTTATAGTTTCCACCGTGACGAGGTTCCTGCAGAGTCTGTTATGCATAAATGTGTGGTGCATTTTGTTCCCTTAAACAAACAGTTTCCGAAACGTAAGCAACATCCTGGCTTTATTGTACAAAAGGTGTATGACACTCTGGAAAGGAAACTCTGGAAGCTGACTGATAAGGACTTTGAGGATGTTAAACAGCAAGAAATTGACGAGCTTGTTCAAAAAACTCGGAAACGCATTGGTGAGCTGCTTGACATTGAGCCCGAAGAAGCCCCTCCTGCTGATCAGGAGGAGGTGACGAAAAATAAAAGAAGCTTAAGGAGAAAGAGCATTTCTCCCATTGATGTTTCAAGGGAGGAGGAAGGAGTTCCTAAAACTGACCAACATTCAAAGCCTGAAACACCAGGGAGCTGTGTAAATAATGACTCAAAGTATCATCGCATATTAGTGAAGTTCAATTCACTAACTGGTAACATTCATCGCGACAAATGGTTGGAGAGGCTGCTTCAACACGTTCAGTACATGTGCAATTATGACGAGAGTATAGAAAAGGCGAAGGGATCAGGAAATGCCGATTCTGATGAAATCAAGAATAAAAACAATGATAAAACTTCAGAAATAGCAAATGACTGTCCAGACAAGGGTCAGAAGAGTTCCAAGTCCTTTGTGTGGCCAGATGCTGCTGTTTCAGCCATAGTTTCTCTTGAAAAAGCTTCGCATGAGGCTCTATCAACAGATTTTCAGAAGTATAACCAAAAGTTGCGGCAACTAGATTTTAATCTCAAGAACAATGCGTTGCTAGCACGCCGTCTGTTAAATGGAGAGTTGAAACCTTCAAAAATGTTGAATATGACACCCATTGAATTAAAGGAGGGCTTGACTGCTGAGGAATTAACCAAGAAAGAGCCTGATGAAAAACAGCACATGCAAATGACAGATGCCCGCTGCTCAAGATGCACGGAATCTAAGGTGGGATTGAGGGAGATTATCCACGCTGGACACGATGACCGTTATCAGCTGGAATGTGTTGCCTGTGGTAATTCCTGGTATGCCTCCCGGGATGAGGTGTCTGCACTGACCATAGACGCACCGGATTCAAAGAAAAGCACAGGCACAGTGCCATTGGCCACTGCAAAATTTGAAGATGTTCAGAAGAAGCTGGCGAGTCCTCGTGAAACTGAAAACTCAGCTGATGACATCTCTAAGAAAACAGGTGAACCACGTATGCCTGTTTTGGACACCCAAAAATCATTTGGCAAGCCCAGGAAAGACGACAATATCGAGGCCAAAAGACATGCTGATAAGGAATGA 1809 0.4124 MVNRRFTQVATSDEDEDEAPPQPPPSQRNSKLRKRKRMKLLDEEEEDSDNNNNNDSDDDDEKEEGKKEQPQTPDDAKPIGDPIRVSGKGRGRKRHYESFEFDGNQYSLEDPVMLVPEDKEQKPYVAIIKDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPKRKQHPGFIVQKVYDTLERKLWKLTDKDFEDVKQQEIDELVQKTRKRIGELLDIEPEEAPPADQEEVTKNKRSLRRKSISPIDVSREEEGVPKTDQHSKPETPGSCVNNDSKYHRILVKFNSLTGNIHRDKWLERLLQHVQYMCNYDESIEKAKGSGNADSDEIKNKNNDKTSEIANDCPDKGQKSSKSFVWPDAAVSAIVSLEKASHEALSTDFQKYNQKLRQLDFNLKNNALLARRLLNGELKPSKMLNMTPIELKEGLTAEELTKKEPDEKQHMQMTDARCSRCTESKVGLREIIHAGHDDRYQLECVACGNSWYASRDEVSALTIDAPDSKKSTGTVPLATAKFEDVQKKLASPRETENSADDISKKTGEPRMPVLDTQKSFGKPRKDDNIEAKRHADKE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00268 602 Gene3D - 347 457 IPR036575 GO:0006351
Tsu05g00268 602 Gene3D - 21 208 IPR043151 -
Tsu05g00268 602 MobiDBLite consensus disorder prediction 253 306 - -
Tsu05g00268 602 CDD BAH_plant_3 86 232 - -
Tsu05g00268 602 ProSiteProfiles TFIIS central domain profile. 326 483 IPR003618 GO:0006351
Tsu05g00268 602 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 596 - -
Tsu05g00268 602 Pfam BAH domain 105 221 IPR001025 GO:0003682
Tsu05g00268 602 MobiDBLite consensus disorder prediction 45 62 - -
Tsu05g00268 602 MobiDBLite consensus disorder prediction 550 572 - -
Tsu05g00268 602 MobiDBLite consensus disorder prediction 260 294 - -
Tsu05g00268 602 MobiDBLite consensus disorder prediction 352 376 - -
Tsu05g00268 602 ProSiteProfiles BAH domain profile. 104 223 IPR001025 GO:0003682
Tsu05g00268 602 SUPERFAMILY Elongation factor TFIIS domain 2 323 456 IPR036575 GO:0006351
Tsu05g00268 602 SMART BAH_4 104 223 IPR001025 GO:0003682
Tsu05g00268 602 MobiDBLite consensus disorder prediction 352 385 - -
Tsu05g00268 602 SMART mid_6 360 465 IPR003618 GO:0006351
Tsu05g00268 602 MobiDBLite consensus disorder prediction 530 602 - -
Tsu05g00268 602 MobiDBLite consensus disorder prediction 583 602 - -
Tsu05g00268 602 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 596 - -
Tsu05g00268 602 MobiDBLite consensus disorder prediction 1 93 - -
Tsu05g00268 602 Pfam Transcription factor S-II (TFIIS), central domain 322 473 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00268 Tsu-Chr5 1981254 1985504 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00268 - - cam:101495294 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00268 05 1981254 1985504 Tsu05g00268 05 1981254 1985504 ECH