Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00254 ATGGCTTCTCTGACAGCATCTTCCTACTCCTTCCCATTCACAACTTCCACCAAATTTTCTCACCCAATTCCCATCTCTTGTTGTTCTTTTCCTCTCAAACACCATACCCTCCTTCCCAGTCTCAAATCATTAAGTTCACCACGAATTGTCTTAGCCTCAGGAGCTGCTGCTACACCCACAACCTCAATTCAAATCCAAAATTCCCCAATCTCTGCCACTCCTTCAAAAGTTCTTCCTTTTCGTGTTGGGCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCCTTAATTATTGGTGGTATTAATATACCCCATGATAGAGGTTGCGAGGCTCATTCTGAtgGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCATTGGGTCTTCCTGATATAGGGCAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGCGACTCTTCGGTGTTCGTCCATGAATCTGTCAGGCTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAAAGGCCGAAATTAAGCCCGCACAAGGATGCTATCAAGGCCAACTTATCTGCATTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTTGTTCTTCTAATGAAGAAATGA 711 0.4304 MASLTASSYSFPFTTSTKFSHPIPISCCSFPLKHHTLLPSLKSLSSPRIVLASGAAATPTTSIQIQNSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00254 236 Gene3D - 77 236 IPR036571 GO:0008685|GO:0016114
Tsu05g00254 236 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 81 235 IPR003526 GO:0008685|GO:0016114
Tsu05g00254 236 Pfam YgbB family 80 233 IPR003526 GO:0008685|GO:0016114
Tsu05g00254 236 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 13 236 IPR003526 GO:0008685|GO:0016114
Tsu05g00254 236 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 114 129 IPR020555 GO:0008685
Tsu05g00254 236 SUPERFAMILY IpsF-like 79 235 IPR036571 GO:0008685|GO:0016114
Tsu05g00254 236 CDD MECDP_synthase 81 233 IPR003526 GO:0008685|GO:0016114
Tsu05g00254 236 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 80 235 IPR003526 GO:0008685|GO:0016114
Tsu05g00254 236 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 13 236 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00254 K01770 - gmx:100306378 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00254 05 1889244 1892320 Tsu05g00254 05 1889244 1892320 ECH