Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00253 ATGGGGTGCTCTTTGTTGATCAATGGTTTGATATTATTGCTGTTTGCCATGAGTAGTCAGAATGGACTATTAGCCATAATGGATGATGAATTACTTAGTAAAAGTTCCTCAGCTAATTATGACTATGTAGATGCTCTTGGCAAAGCCATCTTGTTTTTTGAAGGACAACGCTCAGGAAAATTGCCTAAAGACCAAAGAGTAAAGTGGAGGGGAGATTCAGCACTCTCTGATGGAAAGCCTCAAAATGTGGATTTGGTTGGAGGATACTACGATGCTGGTGATAATGTGAAGTTCGGATGGCCGATGTCATTTACAGTAAGCTTGTTGAGTTGGGCTGCTATTGAATATGAAAGTGAAATTTCTTCGGCAAACCAGCTTGATTACCTCCACGGTGCTATTCGTTGGGGTGCAGACTTCATACTTCAAGCTCACACTTCGCCAACCACACTCTTTACACAGGTGGGAGATGGAAACGCAGATCATAGTTGTTGGGAGCGTCCAGAAGACATGGATACACCGAGAACAACTTACAAGATTGATTCAAATTCTCCTGGAACTGAGGCTGCAGCTGAGGCTGCCGCCGCTCTTTCTGCTGCTTCAATTGCATTTAAGAAAACAGATATCAATTATTCATCCAAACTATTAAGCCAGTCAAAATCCCTATTTGATTTTGCTGACAAGTATAGAGGTACTTACTCGGCTTCTTGCCCATTTTACTGCTCGTACTCTGGTTACCAGGATGAACTGTTATGGGCTGCTTCTTGGCTATACAAGGCTACTGGAGAAAGCAAATACTTGCAGTACATCATAAGCAACCAAGGTTGGAGTCAGGCAGTGTCTGAGTTCAGCTGGGATAACAAATTTGTTGGAGCTCAAACATTACTAACACAGGAATTCTATCGCGGGAAGAAGGAGTTAGCCAAGATTCAGACTGATGCAAAATCATTTATATGTGCATTGATGCCAGGAAGTAGCTCTCTACAGATTAAAACAACTCCTGGTGGGCTTTTGTATATTAGAGATAGTAGTAATTTGCAATATACCACAACCTCAACCATGGTGCTATTCATTTTCTCCAAAATCCTAAACAAAAACCATATCGATGGAATTCATTGTGGCTCTACCAATTTCACCTCCTCTAAAATTAGAGCCTTTGCAAAATCACAGGTGGACTACATACTAGGAAACAATCCTATGAAGATGTCTTATATGGTGGGATATGGCAGTAAATACCCAAAGCAATTACATCATAGAGGTTCTTCCATCCCTTCAATCATAACTCACCCTACCAAAGTTGGTTGCAATGATGGTCAATCAAACTATTTCTCCTCCTCTAATCCAAATCCTAATACTCATGTTGGTGCTATTGTTGGAGGCCCGAATTCTAATGACCAATACAATGATGCAAGATCTGATTACTCTCACGCCGAACCTACCACATATATGAATGCTGCTTTTGTGGGTTCTGTTGCAGCTTTGCTTGGTGAAAGTAAAACTGATGAGACTCTGAAATTTTCTTAA 1521 0.4089 MGCSLLINGLILLLFAMSSQNGLLAIMDDELLSKSSSANYDYVDALGKAILFFEGQRSGKLPKDQRVKWRGDSALSDGKPQNVDLVGGYYDAGDNVKFGWPMSFTVSLLSWAAIEYESEISSANQLDYLHGAIRWGADFILQAHTSPTTLFTQVGDGNADHSCWERPEDMDTPRTTYKIDSNSPGTEAAAEAAAALSAASIAFKKTDINYSSKLLSQSKSLFDFADKYRGTYSASCPFYCSYSGYQDELLWAASWLYKATGESKYLQYIISNQGWSQAVSEFSWDNKFVGAQTLLTQEFYRGKKELAKIQTDAKSFICALMPGSSSLQIKTTPGGLLYIRDSSNLQYTTTSTMVLFIFSKILNKNHIDGIHCGSTNFTSSKIRAFAKSQVDYILGNNPMKMSYMVGYGSKYPKQLHHRGSSIPSIITHPTKVGCNDGQSNYFSSSNPNPNTHVGAIVGGPNSNDQYNDARSDYSHAEPTTYMNAAFVGSVAALLGESKTDETLKFS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00253 506 SUPERFAMILY Six-hairpin glycosidases 39 500 IPR008928 GO:0005975
Tsu05g00253 506 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Tsu05g00253 506 PANTHER ENDO-1,4-BETA-GLUCANASE 3 500 - -
Tsu05g00253 506 MobiDBLite consensus disorder prediction 444 473 - -
Tsu05g00253 506 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Tsu05g00253 506 PANTHER ENDOGLUCANASE 18-RELATED 3 500 - -
Tsu05g00253 506 Pfam Glycosyl hydrolase family 9 42 488 IPR001701 GO:0004553|GO:0005975
Tsu05g00253 506 Gene3D - 36 505 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00253 Tsu-Chr5 1884477 1887072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00253 10 497 Glycoside Hydrolase AT4G23560 69.672 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00253 - - cam:101489803 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00253 05 1884477 1887072 Tsu05g00253 05 1884477 1887072 ECH