Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00251 ATGGAAGCGAACACTTCCTCGCCGTTGCCAACGCTACCTAATTCTGGTACATTGACTGGAACCGTAAACCCAGCGTCACCTTCTTCCGTCAACTTGTATAGAATCACCAAAGTTCTGGAGCGTTTGGCTACACACTTTCATCCCGGCAACCGAAGCGACTCCTTCGAATTTTTTACCCTATGCCTCTCCCTCTCTCGAGGGATTGATTATGCACTTGCCAACGGTGAAACACCGCCGAAAGCTAATGAATTGCCTATGTTGATGAAACAGATGTATCAAAGAAAGACCGATGAACTATCACTTGCAGCTGTAATGGTTTTGATGATATCTGTGAAGAATGCCTGTAAAATTGGATGGTTCCAGAAGAAAGAATCAGAAGAACTTTTAACTATTGCTGACGAGATAGGAAAGATCTACTGCACCCTGGGAACTGTGAGTACCGGACCTAGTTCTAGCCATTCCACAGTATTAGCTATAATGGAAAGGTTCtatccaaaattgaaattgggtCCAATAATTGTGTCAATCGAAGCCAAGCCTGGATATGGAGCTTCTGCTGTTGACTTCCATATCACAAAGACTAATgttcaatcaaataaaaaaattTCGTTATTGGTGGCAAATATTGATAACATTGAAACATCTGCATGCCTCATCAGCCCTCAGCATGTGAATTTTCTCCTGAATGGAAAAGGAATTGACACAAGGACTAGCTTACGAATGGATCCTGGACCACAGATGCCCACTAGTGTGACTAGTATTCTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGTCAGTTCAACGGTCATTATATTATACTTGTTGCCTATATGAATGTTGCATCCTTGCCCGAGCATCCAGTTCTTCCACCAGATTATATTCAGCCTGCTGTAACTTCTGTTGATTCAGATTCAGATGTTATCGAGGGGGATTCGCGGATCTCGCTTATTTGTCCGATAAGCTTAAAACGTATCAAGACTCCTGTTAAAGGGCGTTCATGCAAACATTTCCAGTGCTTCGACTTTGACAATTaccttaaaataaattctaagaGGCCATCCTGGCGCTGCCCCCATTGCACTCAGCCTGTTAGCTATACAGAAATTCGTCTAGACAGAAAAATGATTGAGATCCTAGAAAAAGTTGGAGAGAACATTGTTGAAGTGACTATCAATGCTGATGGATCGTGGAACTCGGTAAATATTCATGATGTGGATAAGATACAGAATAAAACCCACAATTGTGAAAAGGAACAGACTGAACCACAAGAATCTACTAGTTCACCTGATACCATTCCCAATGTTGTGGACCTCACCAACAAAGACTACGATTTGGACATAATGGACATTTGTGAAACTGAAGATAGAAAGCCTTTGCCGGCTTCTCTTGCTACTGGCGTTCAAATAGAAGACGACTTTTGGGCTGGACTTTATCTTGCCAACAGTAGGCCTGATACCCTTTCAGTTGGTGCCGACCTTCCTGTTTTGGCTGATGCTGTTTCTCCTGTATTTAATCAAGTAGCTGAGGGTCATGACAATATTTCTGCCATGCATAACCAGTTTTCGGCACAGAGTAATTTGCAGCTGGCGAGTTATGTGAATTCAGTTGTTAACGAGTATGGAAGGTCCTCCTCAGCACCGAGACATACTCAGAGGACTCCGGTAGCTATTCAGGCCCTCCCAGTCCAATCTCAGTCATTAGGACCGCAGCACAATTCAGTAACTAATTTGGATTCCTTGATAACCAGCAGTTCGTCTGCTACTCATGTTTCTTTGGCCAACCCCACCTCTGCAGATCCTTACAATGCCATACTGAGTGATGCAGAACGACAGCAACTTTTTTCTAGAACCCCTCTGAATATGCCTCAGGTCTCAGCAGCACCACagAACCGAGTGCCAACAGTTAATATGTCAGCCCCAACTCATAACCGAGTGCCACCAGCTAATATGTCAACTCATAACCGAGCACCGAGTCAGTTGCAAAACCAGCAGTACAGAACAGGTATACTGAATGACTTTAGAAATCCGCACCTGCAGCATAGTCTGAATCCCCGGTCACACCAACCAATGCAACCTTCAAATACACAACTGCCTCATGCCCAGCAAGGGGGTTCACAAGCTAATGCAGCCGGACCTGCAGCAAATAGCCAACAAGCCAGGGTTATGGCTTCATCACATGCTGCCAGACAAGGAGAGCAAAGAGGACCGCCAGTACAGGCAGTTTCTAGGACCGACGAATTGTTCAACTCACAACCAGATCAGAATTGGCGTCCTACTTCTCGAATGCGTGGAAGTCTTTCAGGTCAGCAGCTTACTGATCAAGTTAGGCAGAAATTAATTATGCCATCATCACAACAAGTTCAAAGTTCAACACCACAAGCTCCACAACCAGGCCGAACATCGTCCCCATTGGATGTGCTCCTTGCTAACAGTAGAAATGCTCATAATCCTTCAAGACCGTAA 2466 0.4355 MEANTSSPLPTLPNSGTLTGTVNPASPSSVNLYRITKVLERLATHFHPGNRSDSFEFFTLCLSLSRGIDYALANGETPPKANELPMLMKQMYQRKTDELSLAAVMVLMISVKNACKIGWFQKKESEELLTIADEIGKIYCTLGTVSTGPSSSHSTVLAIMERFYPKLKLGPIIVSIEAKPGYGASAVDFHITKTNVQSNKKISLLVANIDNIETSACLISPQHVNFLLNGKGIDTRTSLRMDPGPQMPTSVTSILKFGTNLLQAVGQFNGHYIILVAYMNVASLPEHPVLPPDYIQPAVTSVDSDSDVIEGDSRISLICPISLKRIKTPVKGRSCKHFQCFDFDNYLKINSKRPSWRCPHCTQPVSYTEIRLDRKMIEILEKVGENIVEVTINADGSWNSVNIHDVDKIQNKTHNCEKEQTEPQESTSSPDTIPNVVDLTNKDYDLDIMDICETEDRKPLPASLATGVQIEDDFWAGLYLANSRPDTLSVGADLPVLADAVSPVFNQVAEGHDNISAMHNQFSAQSNLQLASYVNSVVNEYGRSSSAPRHTQRTPVAIQALPVQSQSLGPQHNSVTNLDSLITSSSSATHVSLANPTSADPYNAILSDAERQQLFSRTPLNMPQVSAAPQNRVPTVNMSAPTHNRVPPANMSTHNRAPSQLQNQQYRTGILNDFRNPHLQHSLNPRSHQPMQPSNTQLPHAQQGGSQANAAGPAANSQQARVMASSHAARQGEQRGPPVQAVSRTDELFNSQPDQNWRPTSRMRGSLSGQQLTDQVRQKLIMPSSQQVQSSTPQAPQPGRTSSPLDVLLANSRNAHNPSRP 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00251 821 Pfam MIZ/SP-RING zinc finger 315 363 IPR004181 GO:0008270
Tsu05g00251 821 CDD SP-RING_PIAS_like 316 363 - -
Tsu05g00251 821 PANTHER E4 SUMO-PROTEIN LIGASE PIAL2-LIKE 35 717 - -
Tsu05g00251 821 MobiDBLite consensus disorder prediction 415 434 - -
Tsu05g00251 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 400 IPR013083 -
Tsu05g00251 821 SUPERFAMILY RING/U-box 316 393 - -
Tsu05g00251 821 MobiDBLite consensus disorder prediction 744 821 - -
Tsu05g00251 821 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 35 717 - -
Tsu05g00251 821 MobiDBLite consensus disorder prediction 675 821 - -
Tsu05g00251 821 MobiDBLite consensus disorder prediction 675 725 - -
Tsu05g00251 821 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g00251 821 ProSiteProfiles Zinc finger SP-RING-type profile. 304 385 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00251 Tsu-Chr5 1852446 1861962 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00251 K04706 - gmx:100780539 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00251 05 1852446 1861962 Tsu05g00251 05 1852446 1861962 ECH