Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00247 ATGGAACAGAAAGGAATGCTGATATCGGCCTGCGTTGGGGTCGGAGTTGGAGTTGGCCTTGGTTTGGCTTCTGGACAAACCAAATGGGGGCCGAATTCTGTCTCCTCAAACACCATCACACCCGAGAAAATTGAACACGAAATGCTTCGACTTATTGTTGATGGCAGAGAAAGCAATGTCACTTTTGATAATTTCCCTTATTATCTCAGTGAACAGACACGGGTATTGCTGACAAGTGCTGCCTATGTCCATTTAAAGCATGCGGAGGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCCGGACTATTCTGCTCTCAGGGCCAGCCGAACTTTACCAACAAGTGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCTAAGTTGCTTCTGTTCGATGTAACTGACTTTTCGTTGAAGGTAAGTGGGAAATTTTTTGGTTCTTTAAAAAGGTCTACTTCAGAGACAACCTTGGCTCGGTTATCTGACCTATTTGGGTCAATTCCATTCTTTCCACAAAGAGAAGATAATAAAGTTGCAGGCAAATTCCGCAGGCAAAGCAGTGGCGTAGACCTTCGACGAATGGAGACTGAAGGATCTTCTAATCCTCCTAAGCTTCGTAGGAATGCATCAGCCTCTGGAAATATGAGCAGTCTTGGTTTGCAAAGCAATCCTACAAACTCAGCTCCTGGGAAGCACATAGTCAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGACTATTTACAAGGTTTTAGTATATGTGTCAAAAACGTATCCCATTGTTCTATACCTGCGGGATGTTGATAAGTTGTTGGGTAGATCACAAAGGATATCTAAACTGTTCCAGACAATGTTAACAAAATTATCTGGACAAATTTTGATTCTTGGTTCAAGGGTTGTGGATTCTGGTAATGACTGCAAAGAAGTAGACGATATGCTTGCCTCCCTCTTCCCTTATGACATAGAAATCAAACCACCAGATGATGAATCCCATCTAGTCAGCTGGAAGGCTCAATTTGAACAGGATATGAAGAAGATACAGATTCAGGACAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTCATGACCTGGATTCCATCTGTGTAGAAGACGCAATGGTTCTCAGTAACTCTATAGAAGAGGTTATCGTGTCAGCAATTTCTTATCATTTAATGACTAACAAAGAGCCTGACTACAGAAATGGGAAACTGGTTATTCCGTGTAATAGTTTGTCCCATGCTCTGGGTATATTCCAGGAGGGAAAAAACAGTGGAAGAGATACAATGAAATTAGAAGCTCAAGCGATAACAGCTGAGAGAGAGGAAGGAGCTGCTGTTGTGAAACCAGAAGGAAAGCCTGAAGGTTCTGCTCCTGGTATAAAGACTGAAGCAGAAATACCAGCTTCGGTGGCCAAAACTGACGGTGAAAATTCAGTTCCTGCCCCCAAAGCTGAAGTTCCTGATAATGAGTTCGAGAAGCGAATAAGACCTGAAGTAATACCAGCAAACGAAATTGGGGTAACATTCGCCGATATTGGTGCCTTAGAAGAGACTAAAGAGTCACTTCAAGAACTAGTAATGCTTCCCCTTCGAAGGCCAGACCTTTTTGACGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTACTATTTGGGCCACCTGGCACAGGAAAAACAATGTTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATTAACGTATCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGACGAGAAGAATGTTCGTGCTTTATTTACACTGGCAGCCAAGGTCTCCCCAactattatatttgttgatgaGGTTGATAGTATGCTTGGCCAGCGGACAAGAGTTGGGGAACATGAAGCCATGCGGAAAATAAAGAACGAATTTATGACCAATTGGGATGGACTTACCTCAAAACCATCGGACCGCATCCTTGTCCTCGCTGCTACCAATAGGCCTTTTGACCTGGATGAAGCAATTATTAGACGATTTGAAAGGAGGATTATGGTTGGGCTACCATCTGTGGAGAACAGGGAAAATATATTGAGGACCCTTTTGGCTAAAGAAAAGGTGGATGATGGACTTGATTTTAAGGAACTTGCAACTATGACAGAAGGATACAGCGGAAGTGATCTAAAGAACATATGCACAACAGCTGCTTATAGACCTGTTAGAGAGTTAATTCAGCAAGAGATAAAAAAGGATACGgagaaaaagaagagagaagctGAAGGACAAAATGCTCAGGATGCAGAAGAAGTTGAACAGGAAAGAGTCATTACCCTTAGACCTTTGAATATGCAGGACTTCAAAGTGGCAAAGAGTCAGGTTGCCGCAAGTTTCGCATCTGAGGGAGCTGGAATGAATGAGTTGAAGCAATGGAATGACTTGTACGGAGAAGGTGGTTCGAGGAAGAAAGAACAACTATCTTATTTCCTATGA 2478 0.4221 MEQKGMLISACVGVGVGVGLGLASGQTKWGPNSVSSNTITPEKIEHEMLRLIVDGRESNVTFDNFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLFDVTDFSLKVSGKFFGSLKRSTSETTLARLSDLFGSIPFFPQREDNKVAGKFRRQSSGVDLRRMETEGSSNPPKLRRNASASGNMSSLGLQSNPTNSAPGKHIVSWSFDEKLLIQTIYKVLVYVSKTYPIVLYLRDVDKLLGRSQRISKLFQTMLTKLSGQILILGSRVVDSGNDCKEVDDMLASLFPYDIEIKPPDDESHLVSWKAQFEQDMKKIQIQDNKNHIMEVLAANDLDCHDLDSICVEDAMVLSNSIEEVIVSAISYHLMTNKEPDYRNGKLVIPCNSLSHALGIFQEGKNSGRDTMKLEAQAITAEREEGAAVVKPEGKPEGSAPGIKTEAEIPASVAKTDGENSVPAPKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALEETKESLQELVMLPLRRPDLFDGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTNWDGLTSKPSDRILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENRENILRTLLAKEKVDDGLDFKELATMTEGYSGSDLKNICTTAAYRPVRELIQQEIKKDTEKKKREAEGQNAQDAEEVEQERVITLRPLNMQDFKVAKSQVAASFASEGAGMNELKQWNDLYGEGGSRKKEQLSYFL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00247 825 CDD AAA 551 684 - -
Tsu05g00247 825 MobiDBLite consensus disorder prediction 446 467 - -
Tsu05g00247 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 752 IPR027417 -
Tsu05g00247 825 Coils Coil 745 765 - -
Tsu05g00247 825 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 825 - -
Tsu05g00247 825 MobiDBLite consensus disorder prediction 747 767 - -
Tsu05g00247 825 Pfam AAA+ lid domain 707 748 IPR041569 -
Tsu05g00247 825 SMART AAA_5 549 686 IPR003593 -
Tsu05g00247 825 SMART AAA_5 100 328 IPR003593 -
Tsu05g00247 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 348 IPR027417 -
Tsu05g00247 825 Pfam ATPase family associated with various cellular activities (AAA) 553 683 IPR003959 GO:0005524|GO:0016887
Tsu05g00247 825 Gene3D - 512 795 IPR027417 -
Tsu05g00247 825 Gene3D - 685 787 - -
Tsu05g00247 825 MobiDBLite consensus disorder prediction 202 227 - -
Tsu05g00247 825 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 825 - -
Tsu05g00247 825 MobiDBLite consensus disorder prediction 184 227 - -
Tsu05g00247 825 Gene3D - 35 346 IPR027417 -
Tsu05g00247 825 ProSitePatterns AAA-protein family signature. 656 675 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00247 Tsu-Chr5 1809685 1815372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00247 513 743 Calmodulin-binding Proteins AT3G56690 38.462 1.80e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00247 - - gmx:100808011 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00247 05 1809685 1815372 Tsu05g00247 05 1809685 1815372 ECH
Tsu05g00247 05 1809685 1815372 Tsu02g00408 02 3416401 3422606 PCT