Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00232 ATGTCTTCGTCCAAAGATGCAGACCCTACCTTAGGTTATCTCACTCGCAAAGACACCGAGGTCAAGCTTCCACGTCCAACTAGGGTTAAGAACAAAACTCCTGCACCGATTCAAATTACAGCCGAGCAAATTCTCCGTGAAGCTAGAGAACGTCAAGAAGCTGAGATCCGTCCACCTAAGCAGAAAATCACCGATTCAACTGAGCTCGGCGAGTATCGTCTACGGAAACGTAAGGAATTTGAAGATTTAATTCGACGAGTTCGATGGAATGTAAGTGTATGGATCAAATATGCACAGTGGGAAGAGTCACAGAAAGATTTCGCACGTGCACGTTCTGTTTGGGAAAGAGCTTTAGAAGTTGATTACAAGAATCATACACTATGGTTAAAGTATGCTGAAGTTGAAATGAAAAACAAGTTCATAAATCATGCTAGGAACGTTTGGGATCGCGCTGTTGCTCTTTTACCGCGTGTGGATCAGTTGTGGTATAAGTATATTCATATGGAGGAGATGCTTGGTAATGTTGCTGGAGCTAGGCAGGTTTTCGAGAGGTGGATGAAATGGATGCCGGATCAACAAGGATGGTTAtcttatataaaatttgaactGAGATATAATGAGATTGAACGAGCGAGAGAGATTTTTGAGAGATTTGTTTTGTGTCATCCTAGGGTTGGTGCTTGGATAAGATATGCCAAGTTTGAGATGAAGAATGGCGAGGTTCCTAGGGCAAGGGCTGTTTATGAAAGAGCAGTGGATAGGCTTGCGGACGATGAGGAAGCTGAGCTGCTTTTTGTGGCATTTGCTGAGTTTGAAGAAAGGTGCAAAGAGGCAGAGCGGGCGAGGTGTATATATAAGTTTGCGCTTGATCATATTCCGAAGGGAAGGGCTGAGGATTTGTATCGTAAATTTGTTGCATTTGAAAAACAATATGGTGATAGGGAAGGGATTGAGGATGCTATTGTTGGTAAGAGGAGGTTTCAGtatgaagatgaagtgaggaAAAATCCATTGAATTATGACTCTTGGTTTGATTATATTAGACTGGAAGAGAGTGTGGGGAATAAGGAAAGAACTAGGGAGGTTTATGAGAGAGCTATTGCCAATGTGCCTCCAGCTGAGGAGAAGCGATACTGGCAGCGTTATATTTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGACACTGGAGATATGGAACGAACAAGAGACGTGTACAAGGAGTGTCTCAACCAGATTCCTCACCAGAAGTTCTCATTTGCAAAGATATGGCTTCTAGCAGCCCAATTTGAAATACGCCAGTTGAATCTCAAAGGTGCTCGTCAAATATTAGGAAATGCCATTGGGAAGGCTCCTAAAGATAAGATATTTAAGAAGTATATTGAGATAGAGCTGCAGCTTGGTAACATAGATAGATGTAGAAAATTATATGAGAAGTATCTGGAGTGGTCACCTGAAAATTGCTATGCATGGAGCAAGTATGCAGAATTGGAGAGATCTTTAGCTGAGACCGAACGAGCTAGAGCAATATTTGAGCTTGCAATTGCCCAACCAGCATTGGACATGCCCGAATTGTTGTGGAAGGCATACATTGATTTTGAAACTGCCGAGTGCGAATTCGAGAGAGCAAGAGTGCTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGCTATGCAGAATTTGAAGCAACAGCTATTGATAAGGAGAGTTTAGACTTATCAGAAGAAGAACAAAAGGAGCAATGCATTAAGCGTGCCAGAAGGGTGTTTGAGGAAGCTCTAAACCACTTCAGATCATCAGCTCCGGATTTAAAAGAAGAAAGGGCAATGCTATTGGAGAAATGGCTCAACTTGGAGGCTTCATCTGGGGAGCTAGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGACACGTTTCTACTGAAGATGGTTCATCTAGAATCGAAGAATTTATCGACTATCTATTCCCTGAGGAAACACAGACAACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAAATGTCTTCTGATGATTAA 2088 0.4138 MSSSKDADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFARARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVALLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYNEIERAREIFERFVLCHPRVGAWIRYAKFEMKNGEVPRARAVYERAVDRLADDEEAELLFVAFAEFEERCKEAERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDTGDMERTRDVYKECLNQIPHQKFSFAKIWLLAAQFEIRQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLAETERARAIFELAIAQPALDMPELLWKAYIDFETAECEFERARVLYERLLDRTKHLKVWISYAEFEATAIDKESLDLSEEEQKEQCIKRARRVFEEALNHFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLPKKLKKRRHVSTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKMSSDD 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00232 695 Pfam HAT (Half-A-TPR) repeat 207 235 IPR003107 GO:0006396
Tsu05g00232 695 SUPERFAMILY TPR-like 267 535 IPR011990 GO:0005515
Tsu05g00232 695 PANTHER - 22 695 - -
Tsu05g00232 695 SUPERFAMILY TPR-like 81 205 IPR011990 GO:0005515
Tsu05g00232 695 Gene3D Tetratricopeptide repeat domain 60 328 IPR011990 GO:0005515
Tsu05g00232 695 Gene3D Tetratricopeptide repeat domain 482 663 IPR011990 GO:0005515
Tsu05g00232 695 Gene3D Tetratricopeptide repeat domain 329 481 IPR011990 GO:0005515
Tsu05g00232 695 SMART hat_new_1 105 137 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 320 352 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 398 434 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 71 103 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 239 274 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 539 570 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 354 388 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 206 237 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 469 501 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 173 204 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 503 537 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 139 171 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 436 467 IPR003107 GO:0006396
Tsu05g00232 695 SMART hat_new_1 276 310 IPR003107 GO:0006396
Tsu05g00232 695 MobiDBLite consensus disorder prediction 11 27 - -
Tsu05g00232 695 MobiDBLite consensus disorder prediction 1 34 - -
Tsu05g00232 695 Coils Coil 495 515 - -
Tsu05g00232 695 PANTHER PRE-MRNA SPLICING FACTOR 22 695 IPR045075 GO:0000398
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00232 Tsu-Chr5 1691557 1698974 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00232 K12869 - gmx:100811745 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00232 05 1691557 1698974 Tsu05g00232 05 1691557 1698974 ECH